Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC15.7■□□□□ 0.1
FOXA2Q9Y261 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 CALM3-202ENST00000391918 702 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 CD99P1-205ENST00000527459 561 ntBASIC15.69■□□□□ 0.1
FOXA2Q9Y261 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA2Q9Y261 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 TBCB-214ENST00000629269 413 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA2Q9Y261 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 GAS7-202ENST00000396115 929 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 ABHD17AP6-201ENST00000458502 1044 ntBASIC15.67■□□□□ 0.1
FOXA2Q9Y261 UNC93B5-201ENST00000530315 699 ntBASIC15.67■□□□□ 0.1
FOXA2Q9Y261 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 SOX15-203ENST00000570788 1093 ntBASIC15.67■□□□□ 0.1
FOXA2Q9Y261 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA2Q9Y261 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms