Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.05■□□□□ 0.32
LIME1Q9H400 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.05■□□□□ 0.32
LIME1Q9H400 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LIME1Q9H400 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.05■□□□□ 0.32
LIME1Q9H400 KRT16P1-201ENST00000399124 1418 ntBASIC17.04■□□□□ 0.32
LIME1Q9H400 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
LIME1Q9H400 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.04■□□□□ 0.32
LIME1Q9H400 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.04■□□□□ 0.32
LIME1Q9H400 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
LIME1Q9H400 NIFKP9-201ENST00000419265 221 ntBASIC17.04■□□□□ 0.32
LIME1Q9H400 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.04■□□□□ 0.32
LIME1Q9H400 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.04■□□□□ 0.32
LIME1Q9H400 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
LIME1Q9H400 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
LIME1Q9H400 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.04■□□□□ 0.32
LIME1Q9H400 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.04■□□□□ 0.32
LIME1Q9H400 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LIME1Q9H400 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.04■□□□□ 0.32
LIME1Q9H400 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.04■□□□□ 0.32
LIME1Q9H400 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.03■□□□□ 0.32
LIME1Q9H400 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LIME1Q9H400 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.03■□□□□ 0.32
LIME1Q9H400 LIN28AP1-201ENST00000429574 405 ntBASIC17.03■□□□□ 0.32
LIME1Q9H400 ECEL1P2-202ENST00000465689 757 ntBASIC17.03■□□□□ 0.32
LIME1Q9H400 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.03■□□□□ 0.32
LIME1Q9H400 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.03■□□□□ 0.32
LIME1Q9H400 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.03■□□□□ 0.32
LIME1Q9H400 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.03■□□□□ 0.32
LIME1Q9H400 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.03■□□□□ 0.32
LIME1Q9H400 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.03■□□□□ 0.32
LIME1Q9H400 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.03■□□□□ 0.32
LIME1Q9H400 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LIME1Q9H400 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LIME1Q9H400 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIME1Q9H400 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LIME1Q9H400 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.02■□□□□ 0.32
LIME1Q9H400 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.02■□□□□ 0.32
LIME1Q9H400 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.02■□□□□ 0.32
LIME1Q9H400 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.02■□□□□ 0.32
LIME1Q9H400 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.02■□□□□ 0.32
LIME1Q9H400 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.02■□□□□ 0.32
LIME1Q9H400 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.02■□□□□ 0.32
LIME1Q9H400 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.02■□□□□ 0.32
LIME1Q9H400 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIME1Q9H400 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms