Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
LRFN3Q9BTN0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LRFN3Q9BTN0 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.46■□□□□ 0.71
LRFN3Q9BTN0 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LRFN3Q9BTN0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LRFN3Q9BTN0 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.46■□□□□ 0.71
LRFN3Q9BTN0 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 AL035633.1-201ENST00000406139 838 ntBASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 AC148477.8-201ENST00000624298 468 ntBASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LRFN3Q9BTN0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 LINC00167-201ENST00000530583 1419 ntBASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 GPX1P2-201ENST00000429271 606 ntBASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 AC004967.1-201ENST00000453589 447 ntBASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LRFN3Q9BTN0 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 AC018553.1-201ENST00000616682 1458 ntBASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 FAM8A3P-201ENST00000427218 844 ntBASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 AF186996.4-201ENST00000467186 377 ntBASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.43■□□□□ 0.7
LRFN3Q9BTN0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LRFN3Q9BTN0 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 AC112482.1-201ENST00000492080 688 ntBASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRFN3Q9BTN0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRFN3Q9BTN0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
LRFN3Q9BTN0 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
LRFN3Q9BTN0 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms