Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 AC113410.3-201ENST00000623366 203 ntBASIC19.9■□□□□ 0.78
SKA1Q96BD8 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.9■□□□□ 0.78
SKA1Q96BD8 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SKA1Q96BD8 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SKA1Q96BD8 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SKA1Q96BD8 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SKA1Q96BD8 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SKA1Q96BD8 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SKA1Q96BD8 HLA-G-202ENST00000376815 851 ntBASIC19.89■□□□□ 0.77
SKA1Q96BD8 HLA-G-203ENST00000376818 1127 ntBASIC19.89■□□□□ 0.77
SKA1Q96BD8 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 KRT16P5-201ENST00000455284 522 ntBASIC19.89■□□□□ 0.77
SKA1Q96BD8 KRT8P36-201ENST00000489121 1440 ntBASIC19.89■□□□□ 0.77
SKA1Q96BD8 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SKA1Q96BD8 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 AL121906.2-201ENST00000621597 723 ntBASIC19.89■□□□□ 0.77
SKA1Q96BD8 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SKA1Q96BD8 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SKA1Q96BD8 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
SKA1Q96BD8 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SKA1Q96BD8 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SKA1Q96BD8 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 AC004264.1-201ENST00000608354 794 ntBASIC19.88■□□□□ 0.77
SKA1Q96BD8 MIR2861-201ENST00000636310 90 ntBASIC19.88■□□□□ 0.77
SKA1Q96BD8 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.88■□□□□ 0.77
SKA1Q96BD8 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SKA1Q96BD8 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA1Q96BD8 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms