Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 GUSBP6-202ENST00000438529 1198 ntBASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 AC006970.2-201ENST00000450065 779 ntBASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 AL121832.2-201ENST00000610979 668 ntBASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
ATG4AQ8WYN0 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 AC141586.3-201ENST00000562166 1838 ntBASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 RPS2P52-201ENST00000469610 820 ntBASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 AC091874.3-201ENST00000512672 1195 ntBASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 AC092118.2-201ENST00000613495 667 ntBASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 CROCCP3-202ENST00000420820 1947 ntBASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
ATG4AQ8WYN0 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.1■□□□□ 0.81
ATG4AQ8WYN0 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 SDHAP1-207ENST00000440850 2000 ntBASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ATG4AQ8WYN0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 MIR935-201ENST00000401179 91 ntBASIC20.08■□□□□ 0.81
ATG4AQ8WYN0 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms