Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 AC004264.1-201ENST00000608354 794 ntBASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC65Q8IXS2 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 KRASP1-201ENST00000407852 552 ntBASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 RN7SL471P-201ENST00000580476 299 ntBASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CCDC65Q8IXS2 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 AC128676.1-201ENST00000454392 318 ntBASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC65Q8IXS2 AL032819.2-201ENST00000624543 2162 ntBASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC65Q8IXS2 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 FAM201B-201ENST00000458407 597 ntBASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC65Q8IXS2 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms