Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LRRC28Q86X40 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
LRRC28Q86X40 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LRRC28Q86X40 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LRRC28Q86X40 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LRRC28Q86X40 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LRRC28Q86X40 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.25■□□□□ 0.35
LRRC28Q86X40 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.25■□□□□ 0.35
LRRC28Q86X40 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.25■□□□□ 0.35
LRRC28Q86X40 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 AC069152.1-201ENST00000438030 544 ntBASIC17.25■□□□□ 0.35
LRRC28Q86X40 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.25■□□□□ 0.35
LRRC28Q86X40 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.25■□□□□ 0.35
LRRC28Q86X40 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.25■□□□□ 0.35
LRRC28Q86X40 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LRRC28Q86X40 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 AC092118.2-201ENST00000613495 667 ntBASIC17.24■□□□□ 0.35
LRRC28Q86X40 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 AC005332.8-201ENST00000622750 2735 ntBASIC17.24■□□□□ 0.35
LRRC28Q86X40 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LRRC28Q86X40 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LRRC28Q86X40 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
LRRC28Q86X40 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
LRRC28Q86X40 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 MCRIP2P1-201ENST00000394346 511 ntBASIC17.23■□□□□ 0.35
LRRC28Q86X40 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.23■□□□□ 0.35
LRRC28Q86X40 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.23■□□□□ 0.35
LRRC28Q86X40 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC28Q86X40 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.23■□□□□ 0.35
LRRC28Q86X40 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.23■□□□□ 0.35
LRRC28Q86X40 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.23■□□□□ 0.35
LRRC28Q86X40 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.23■□□□□ 0.35
LRRC28Q86X40 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
LRRC28Q86X40 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LRRC28Q86X40 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC28Q86X40 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC28Q86X40 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC28Q86X40 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
LRRC28Q86X40 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC28Q86X40 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC28Q86X40 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LRRC28Q86X40 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.22■□□□□ 0.35
LRRC28Q86X40 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LRRC28Q86X40 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms