Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.8■■□□□ 1.4
USP48Q86UV5 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC23.8■■□□□ 1.4
USP48Q86UV5 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC23.8■■□□□ 1.4
USP48Q86UV5 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC23.8■■□□□ 1.4
USP48Q86UV5 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
USP48Q86UV5 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC23.8■■□□□ 1.4
USP48Q86UV5 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC23.8■■□□□ 1.4
USP48Q86UV5 MESTP1-201ENST00000404287 994 ntBASIC23.8■■□□□ 1.4
USP48Q86UV5 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC23.8■■□□□ 1.4
USP48Q86UV5 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 EGLN1P1-201ENST00000531623 762 ntBASIC23.8■■□□□ 1.4
USP48Q86UV5 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 AL031985.4-201ENST00000642138 673 ntBASIC23.8■■□□□ 1.4
USP48Q86UV5 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP48Q86UV5 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC23.8■■□□□ 1.4
USP48Q86UV5 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC23.8■■□□□ 1.4
USP48Q86UV5 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC23.79■■□□□ 1.4
USP48Q86UV5 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC23.79■■□□□ 1.4
USP48Q86UV5 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
USP48Q86UV5 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
USP48Q86UV5 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
USP48Q86UV5 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 ISCU-203ENST00000431221 799 ntTSL 2 BASIC23.79■■□□□ 1.4
USP48Q86UV5 TPM4P1-201ENST00000436100 807 ntBASIC23.79■■□□□ 1.4
USP48Q86UV5 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 AC022616.7-201ENST00000525383 220 ntBASIC23.79■■□□□ 1.4
USP48Q86UV5 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.79■■□□□ 1.4
USP48Q86UV5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP48Q86UV5 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP48Q86UV5 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC23.78■■□□□ 1.4
USP48Q86UV5 KRT8P36-201ENST00000489121 1440 ntBASIC23.78■■□□□ 1.4
USP48Q86UV5 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP48Q86UV5 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.78■■□□□ 1.4
USP48Q86UV5 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP48Q86UV5 TSPY14P-201ENST00000303979 915 ntBASIC23.78■■□□□ 1.4
USP48Q86UV5 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP48Q86UV5 INGX-201ENST00000359239 846 ntBASIC23.78■■□□□ 1.4
USP48Q86UV5 BX664615.1-201ENST00000443558 458 ntBASIC23.78■■□□□ 1.4
USP48Q86UV5 AC063952.2-201ENST00000498792 1227 ntBASIC23.78■■□□□ 1.4
USP48Q86UV5 KRT18P56-201ENST00000507275 550 ntBASIC23.78■■□□□ 1.4
USP48Q86UV5 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
USP48Q86UV5 TOLLIP-AS1-201ENST00000530897 939 ntBASIC23.78■■□□□ 1.4
USP48Q86UV5 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC23.78■■□□□ 1.4
USP48Q86UV5 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC23.78■■□□□ 1.4
USP48Q86UV5 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP48Q86UV5 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC23.78■■□□□ 1.4
USP48Q86UV5 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP48Q86UV5 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC23.78■■□□□ 1.4
USP48Q86UV5 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP48Q86UV5 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP48Q86UV5 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.77■■□□□ 1.4
USP48Q86UV5 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC23.77■■□□□ 1.4
USP48Q86UV5 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
USP48Q86UV5 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP48Q86UV5 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP48Q86UV5 FSCN1P1-201ENST00000568912 1481 ntBASIC23.77■■□□□ 1.4
USP48Q86UV5 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP48Q86UV5 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC23.77■■□□□ 1.4
USP48Q86UV5 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
USP48Q86UV5 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP48Q86UV5 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.77■■□□□ 1.4
USP48Q86UV5 RNF165-205ENST00000588679 2904 ntBASIC23.77■■□□□ 1.39
USP48Q86UV5 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC23.76■■□□□ 1.39
USP48Q86UV5 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.76■■□□□ 1.39
USP48Q86UV5 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC23.76■■□□□ 1.39
USP48Q86UV5 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC23.76■■□□□ 1.39
USP48Q86UV5 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC23.76■■□□□ 1.39
USP48Q86UV5 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
USP48Q86UV5 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
USP48Q86UV5 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 KRT126P-201ENST00000549467 1181 ntBASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms