Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDLIM3Q53GG5 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDLIM3Q53GG5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
PDLIM3Q53GG5 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.08■□□□□ 0.17
PDLIM3Q53GG5 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
PDLIM3Q53GG5 OR6D1P-202ENST00000641007 5290 ntBASIC16.08■□□□□ 0.17
PDLIM3Q53GG5 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 AL512625.2-201ENST00000417533 625 ntBASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 AC133561.5-201ENST00000635547 218 ntBASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 AC068338.2-201ENST00000563278 1430 ntBASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.08■□□□□ 0.16
PDLIM3Q53GG5 AC005332.7-201ENST00000614046 2005 ntBASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 RCN1P1-201ENST00000400413 996 ntBASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 AC091874.3-201ENST00000512672 1195 ntBASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 RNF121-214ENST00000533380 870 ntTSL 3 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PDLIM3Q53GG5 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 AC087633.2-202ENST00000565166 1439 ntBASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 AC093787.1-201ENST00000450396 207 ntBASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 AC069236.1-201ENST00000604339 616 ntBASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC16.06■□□□□ 0.16
PDLIM3Q53GG5 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms