Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC22.56■■□□□ 1.2
CCDC144BQ3MJ40 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.56■■□□□ 1.2
CCDC144BQ3MJ40 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC22.56■■□□□ 1.2
CCDC144BQ3MJ40 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC22.56■■□□□ 1.2
CCDC144BQ3MJ40 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CCDC144BQ3MJ40 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC22.56■■□□□ 1.2
CCDC144BQ3MJ40 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC144BQ3MJ40 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC144BQ3MJ40 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CCDC144BQ3MJ40 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 AP000974.1-201ENST00000623909 2387 ntBASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 HLA-G-202ENST00000376815 851 ntBASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 HLA-G-203ENST00000376818 1127 ntBASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 REXO1L10P-201ENST00000615707 1290 ntBASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CCDC144BQ3MJ40 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 TMPOP1-202ENST00000424642 1267 ntBASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 RN7SL850P-201ENST00000579959 291 ntBASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 AC092720.2-201ENST00000602388 1665 ntBASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 AC079598.2-202ENST00000546624 1451 ntBASIC22.54■■□□□ 1.2
CCDC144BQ3MJ40 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 LBX2-AS1-202ENST00000603175 2083 ntBASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 KRT8P9-201ENST00000558927 1449 ntBASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
CCDC144BQ3MJ40 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 MIR6786-201ENST00000616843 113 ntBASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC22.52■■□□□ 1.2
CCDC144BQ3MJ40 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC22.52■■□□□ 1.19
CCDC144BQ3MJ40 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 UNC93B2-201ENST00000285383 730 ntBASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 AC145285.6-201ENST00000604632 637 ntBASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 AP000525.1-201ENST00000608286 694 ntBASIC22.51■■□□□ 1.19
CCDC144BQ3MJ40 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms