Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.44■□□□□ 0.54
LIM2P55344 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.44■□□□□ 0.54
LIM2P55344 AL158047.1-201ENST00000445918 881 ntBASIC18.44■□□□□ 0.54
LIM2P55344 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
LIM2P55344 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.44■□□□□ 0.54
LIM2P55344 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
LIM2P55344 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.44■□□□□ 0.54
LIM2P55344 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 AC005332.7-201ENST00000614046 2005 ntBASIC18.44■□□□□ 0.54
LIM2P55344 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.43■□□□□ 0.54
LIM2P55344 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.43■□□□□ 0.54
LIM2P55344 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
LIM2P55344 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
LIM2P55344 AC093484.2-201ENST00000580996 2166 ntBASIC18.43■□□□□ 0.54
LIM2P55344 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
LIM2P55344 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
LIM2P55344 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.43■□□□□ 0.54
LIM2P55344 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.43■□□□□ 0.54
LIM2P55344 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.43■□□□□ 0.54
LIM2P55344 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.43■□□□□ 0.54
LIM2P55344 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
LIM2P55344 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.43■□□□□ 0.54
LIM2P55344 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIM2P55344 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.43■□□□□ 0.54
LIM2P55344 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.42■□□□□ 0.54
LIM2P55344 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
LIM2P55344 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.42■□□□□ 0.54
LIM2P55344 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.42■□□□□ 0.54
LIM2P55344 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
LIM2P55344 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.42■□□□□ 0.54
LIM2P55344 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.42■□□□□ 0.54
LIM2P55344 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.42■□□□□ 0.54
LIM2P55344 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.42■□□□□ 0.54
LIM2P55344 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.42■□□□□ 0.54
LIM2P55344 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
LIM2P55344 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.42■□□□□ 0.54
LIM2P55344 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LIM2P55344 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.41■□□□□ 0.54
LIM2P55344 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.41■□□□□ 0.54
LIM2P55344 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
LIM2P55344 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.41■□□□□ 0.54
LIM2P55344 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.41■□□□□ 0.54
LIM2P55344 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.41■□□□□ 0.54
LIM2P55344 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.41■□□□□ 0.54
LIM2P55344 C1QL1P1-201ENST00000568105 661 ntBASIC18.41■□□□□ 0.54
LIM2P55344 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.41■□□□□ 0.54
LIM2P55344 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.41■□□□□ 0.54
LIM2P55344 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LIM2P55344 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIM2P55344 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.41■□□□□ 0.54
LIM2P55344 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.41■□□□□ 0.54
LIM2P55344 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 AL020996.1-203ENST00000536896 2307 ntBASIC18.4■□□□□ 0.54
LIM2P55344 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIM2P55344 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.4■□□□□ 0.54
LIM2P55344 BX323043.1-201ENST00000641006 1765 ntBASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms