Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CLCN3P51790 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.38■■□□□ 1.01
CLCN3P51790 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.38■■□□□ 1.01
CLCN3P51790 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.38■■□□□ 1.01
CLCN3P51790 INGX-201ENST00000359239 846 ntBASIC21.38■■□□□ 1.01
CLCN3P51790 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
CLCN3P51790 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 AC113347.1-201ENST00000413321 391 ntBASIC21.38■■□□□ 1.01
CLCN3P51790 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
CLCN3P51790 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.38■■□□□ 1.01
CLCN3P51790 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
CLCN3P51790 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
CLCN3P51790 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.38■■□□□ 1.01
CLCN3P51790 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CLCN3P51790 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.38■■□□□ 1.01
CLCN3P51790 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLCN3P51790 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.37■■□□□ 1.01
CLCN3P51790 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
CLCN3P51790 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLCN3P51790 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.37■■□□□ 1.01
CLCN3P51790 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLCN3P51790 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLCN3P51790 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.37■■□□□ 1.01
CLCN3P51790 SLC25A3P1-201ENST00000443844 931 ntBASIC21.37■■□□□ 1.01
CLCN3P51790 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.37■■□□□ 1.01
CLCN3P51790 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.37■■□□□ 1.01
CLCN3P51790 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.37■■□□□ 1.01
CLCN3P51790 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLCN3P51790 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLCN3P51790 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.37■■□□□ 1.01
CLCN3P51790 AC096733.2-201ENST00000609937 1394 ntBASIC21.36■■□□□ 1.01
CLCN3P51790 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CLCN3P51790 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.36■■□□□ 1.01
CLCN3P51790 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLCN3P51790 KRT8P41-201ENST00000533985 1514 ntBASIC21.36■■□□□ 1.01
CLCN3P51790 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CLCN3P51790 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.36■■□□□ 1.01
CLCN3P51790 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLCN3P51790 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.36■■□□□ 1.01
CLCN3P51790 ECEL1P2-202ENST00000465689 757 ntBASIC21.36■■□□□ 1.01
CLCN3P51790 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CLCN3P51790 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.36■■□□□ 1.01
CLCN3P51790 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CLCN3P51790 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLCN3P51790 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CLCN3P51790 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CLCN3P51790 PCDHAC2-203ENST00000615316 3011 ntBASIC21.36■■□□□ 1.01
CLCN3P51790 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.36■■□□□ 1.01
CLCN3P51790 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.35■■□□□ 1.01
CLCN3P51790 LINC01521-201ENST00000504184 1943 ntBASIC21.35■■□□□ 1.01
CLCN3P51790 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLCN3P51790 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLCN3P51790 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLCN3P51790 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CLCN3P51790 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.35■■□□□ 1.01
CLCN3P51790 TSPY14P-201ENST00000303979 915 ntBASIC21.35■■□□□ 1.01
CLCN3P51790 TERF1P1-201ENST00000311003 1181 ntBASIC21.35■■□□□ 1.01
CLCN3P51790 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLCN3P51790 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.35■■□□□ 1.01
CLCN3P51790 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.35■■□□□ 1.01
CLCN3P51790 EGLN1P1-201ENST00000531623 762 ntBASIC21.35■■□□□ 1.01
CLCN3P51790 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.35■■□□□ 1.01
CLCN3P51790 AC092865.7-201ENST00000641832 219 ntBASIC21.35■■□□□ 1.01
CLCN3P51790 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLCN3P51790 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLCN3P51790 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CLCN3P51790 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLCN3P51790 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLCN3P51790 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.35■■□□□ 1.01
CLCN3P51790 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.35■■□□□ 1.01
CLCN3P51790 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CLCN3P51790 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.35■■□□□ 1.01
CLCN3P51790 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.34■■□□□ 1.01
CLCN3P51790 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.34■■□□□ 1.01
CLCN3P51790 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLCN3P51790 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.34■■□□□ 1.01
CLCN3P51790 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CLCN3P51790 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLCN3P51790 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.34■■□□□ 1.01
CLCN3P51790 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CLCN3P51790 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.34■■□□□ 1.01
CLCN3P51790 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CLCN3P51790 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.34■■□□□ 1.01
CLCN3P51790 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
CLCN3P51790 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.34■■□□□ 1.01
CLCN3P51790 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CLCN3P51790 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CLCN3P51790 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLCN3P51790 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms