Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SOX2P48431 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.08■□□□□ 0.33
SOX2P48431 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
SOX2P48431 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SOX2P48431 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.08■□□□□ 0.33
SOX2P48431 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SOX2P48431 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.08■□□□□ 0.32
SOX2P48431 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.08■□□□□ 0.32
SOX2P48431 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SOX2P48431 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.08■□□□□ 0.32
SOX2P48431 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.08■□□□□ 0.32
SOX2P48431 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.08■□□□□ 0.32
SOX2P48431 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SOX2P48431 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SOX2P48431 CNN2P6-201ENST00000439038 900 ntBASIC17.08■□□□□ 0.32
SOX2P48431 AC034268.1-201ENST00000441047 882 ntBASIC17.08■□□□□ 0.32
SOX2P48431 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SOX2P48431 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.08■□□□□ 0.32
SOX2P48431 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC17.08■□□□□ 0.32
SOX2P48431 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.08■□□□□ 0.32
SOX2P48431 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.08■□□□□ 0.32
SOX2P48431 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
SOX2P48431 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SOX2P48431 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SOX2P48431 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.08■□□□□ 0.32
SOX2P48431 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SOX2P48431 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.08■□□□□ 0.32
SOX2P48431 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SOX2P48431 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SOX2P48431 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SOX2P48431 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.08■□□□□ 0.32
SOX2P48431 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SOX2P48431 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SOX2P48431 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.08■□□□□ 0.32
SOX2P48431 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SOX2P48431 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SOX2P48431 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
SOX2P48431 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SOX2P48431 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SOX2P48431 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX2P48431 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX2P48431 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC17.07■□□□□ 0.32
SOX2P48431 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SOX2P48431 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.07■□□□□ 0.32
SOX2P48431 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.07■□□□□ 0.32
SOX2P48431 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.07■□□□□ 0.32
SOX2P48431 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SOX2P48431 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX2P48431 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SOX2P48431 AL161938.1-201ENST00000569833 2180 ntBASIC17.06■□□□□ 0.32
SOX2P48431 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
SOX2P48431 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX2P48431 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.06■□□□□ 0.32
SOX2P48431 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX2P48431 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX2P48431 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX2P48431 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.06■□□□□ 0.32
SOX2P48431 AC007613.1-201ENST00000572811 2597 ntBASIC17.06■□□□□ 0.32
SOX2P48431 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX2P48431 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX2P48431 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SOX2P48431 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX2P48431 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX2P48431 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX2P48431 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX2P48431 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC17.06■□□□□ 0.32
SOX2P48431 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX2P48431 AC069236.1-201ENST00000604339 616 ntBASIC17.06■□□□□ 0.32
SOX2P48431 AC011767.1-201ENST00000617410 1153 ntBASIC17.06■□□□□ 0.32
SOX2P48431 AL049812.1-201ENST00000432563 2267 ntBASIC17.06■□□□□ 0.32
SOX2P48431 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SOX2P48431 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SOX2P48431 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
SOX2P48431 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC17.06■□□□□ 0.32
SOX2P48431 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SOX2P48431 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX2P48431 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SOX2P48431 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX2P48431 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
SOX2P48431 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.05■□□□□ 0.32
SOX2P48431 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms