Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CDX1P47902 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
CDX1P47902 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.79■□□□□ 0.12
CDX1P47902 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC15.79■□□□□ 0.12
CDX1P47902 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC15.79■□□□□ 0.12
CDX1P47902 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC15.79■□□□□ 0.12
CDX1P47902 C2orf69P4-201ENST00000565394 541 ntBASIC15.79■□□□□ 0.12
CDX1P47902 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 BRWD1-AS2-201ENST00000603064 1028 ntBASIC15.79■□□□□ 0.12
CDX1P47902 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CDX1P47902 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC15.79■□□□□ 0.12
CDX1P47902 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.79■□□□□ 0.12
CDX1P47902 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDX1P47902 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CDX1P47902 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CDX1P47902 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC15.78■□□□□ 0.12
CDX1P47902 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CDX1P47902 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC15.78■□□□□ 0.12
CDX1P47902 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CDX1P47902 CRK-204ENST00000574295 1391 ntTSL 5 BASIC15.78■□□□□ 0.12
CDX1P47902 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
CDX1P47902 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC15.78■□□□□ 0.12
CDX1P47902 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CDX1P47902 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC15.78■□□□□ 0.12
CDX1P47902 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 UNC93B5-201ENST00000530315 699 ntBASIC15.78■□□□□ 0.12
CDX1P47902 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CDX1P47902 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC15.78■□□□□ 0.12
CDX1P47902 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CDX1P47902 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC15.78■□□□□ 0.12
CDX1P47902 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC15.78■□□□□ 0.12
CDX1P47902 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC15.78■□□□□ 0.12
CDX1P47902 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CDX1P47902 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDX1P47902 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC15.78■□□□□ 0.12
CDX1P47902 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC15.77■□□□□ 0.12
CDX1P47902 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC15.77■□□□□ 0.12
CDX1P47902 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 AC005332.7-201ENST00000614046 2005 ntBASIC15.77■□□□□ 0.12
CDX1P47902 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
CDX1P47902 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.77■□□□□ 0.12
CDX1P47902 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CDX1P47902 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CDX1P47902 AC099778.1-201ENST00000568593 1911 ntBASIC15.77■□□□□ 0.12
CDX1P47902 MFF-205ENST00000354503 1085 ntTSL 2 BASIC15.77■□□□□ 0.12
CDX1P47902 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC15.77■□□□□ 0.12
CDX1P47902 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC15.77■□□□□ 0.12
CDX1P47902 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC15.77■□□□□ 0.12
CDX1P47902 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC15.77■□□□□ 0.12
CDX1P47902 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDX1P47902 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CDX1P47902 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CDX1P47902 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.77■□□□□ 0.11
CDX1P47902 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.77■□□□□ 0.11
CDX1P47902 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC15.77■□□□□ 0.11
CDX1P47902 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDX1P47902 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDX1P47902 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDX1P47902 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
CDX1P47902 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDX1P47902 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms