Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.26■□□□□ 0.51
SOX3P41225 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.26■□□□□ 0.51
SOX3P41225 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SOX3P41225 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SOX3P41225 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.26■□□□□ 0.51
SOX3P41225 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.26■□□□□ 0.51
SOX3P41225 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.26■□□□□ 0.51
SOX3P41225 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.26■□□□□ 0.51
SOX3P41225 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SOX3P41225 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SOX3P41225 TNXA-203ENST00000507684 2038 ntBASIC18.25■□□□□ 0.51
SOX3P41225 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SOX3P41225 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SOX3P41225 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SOX3P41225 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.25■□□□□ 0.51
SOX3P41225 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SOX3P41225 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SOX3P41225 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SOX3P41225 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.25■□□□□ 0.51
SOX3P41225 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.25■□□□□ 0.51
SOX3P41225 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.25■□□□□ 0.51
SOX3P41225 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.25■□□□□ 0.51
SOX3P41225 RPS2P4-201ENST00000476944 856 ntBASIC18.25■□□□□ 0.51
SOX3P41225 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.25■□□□□ 0.51
SOX3P41225 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.25■□□□□ 0.51
SOX3P41225 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SOX3P41225 BX119927.1-201ENST00000636596 1552 ntBASIC18.25■□□□□ 0.51
SOX3P41225 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SOX3P41225 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SOX3P41225 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SOX3P41225 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX3P41225 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX3P41225 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.24■□□□□ 0.51
SOX3P41225 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX3P41225 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX3P41225 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.24■□□□□ 0.51
SOX3P41225 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
SOX3P41225 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.24■□□□□ 0.51
SOX3P41225 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.24■□□□□ 0.51
SOX3P41225 NBPF21P-201ENST00000425093 1451 ntBASIC18.24■□□□□ 0.51
SOX3P41225 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.24■□□□□ 0.51
SOX3P41225 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX3P41225 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX3P41225 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX3P41225 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.24■□□□□ 0.51
SOX3P41225 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX3P41225 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.24■□□□□ 0.51
SOX3P41225 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SOX3P41225 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SOX3P41225 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SOX3P41225 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SOX3P41225 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
SOX3P41225 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.23■□□□□ 0.51
SOX3P41225 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SOX3P41225 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.23■□□□□ 0.51
SOX3P41225 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.23■□□□□ 0.51
SOX3P41225 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.23■□□□□ 0.51
SOX3P41225 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.23■□□□□ 0.51
SOX3P41225 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.23■□□□□ 0.51
SOX3P41225 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.23■□□□□ 0.51
SOX3P41225 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.23■□□□□ 0.51
SOX3P41225 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.23■□□□□ 0.51
SOX3P41225 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX3P41225 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.23■□□□□ 0.51
SOX3P41225 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX3P41225 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX3P41225 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.22■□□□□ 0.51
SOX3P41225 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms