Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.94■■□□□ 1.1
CIITAP33076 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.94■■□□□ 1.1
CIITAP33076 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.94■■□□□ 1.1
CIITAP33076 B3GAT3P1-201ENST00000471720 806 ntBASIC21.94■■□□□ 1.1
CIITAP33076 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
CIITAP33076 AL355075.4-201ENST00000554988 638 ntBASIC21.94■■□□□ 1.1
CIITAP33076 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.94■■□□□ 1.1
CIITAP33076 MIR6786-201ENST00000616843 113 ntBASIC21.94■■□□□ 1.1
CIITAP33076 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CIITAP33076 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.94■■□□□ 1.1
CIITAP33076 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CIITAP33076 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
CIITAP33076 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CIITAP33076 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
CIITAP33076 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
CIITAP33076 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CIITAP33076 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.94■■□□□ 1.1
CIITAP33076 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
CIITAP33076 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CIITAP33076 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
CIITAP33076 TSPY15P-201ENST00000457163 923 ntBASIC21.93■■□□□ 1.1
CIITAP33076 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
CIITAP33076 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.93■■□□□ 1.1
CIITAP33076 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.93■■□□□ 1.1
CIITAP33076 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.93■■□□□ 1.1
CIITAP33076 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.93■■□□□ 1.1
CIITAP33076 FSCN1P1-201ENST00000568912 1481 ntBASIC21.93■■□□□ 1.1
CIITAP33076 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
CIITAP33076 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.93■■□□□ 1.1
CIITAP33076 AC130371.2-201ENST00000619443 611 ntBASIC21.93■■□□□ 1.1
CIITAP33076 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CIITAP33076 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CIITAP33076 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CIITAP33076 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CIITAP33076 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CIITAP33076 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CIITAP33076 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CIITAP33076 RCC2P6-201ENST00000526625 1557 ntBASIC21.92■■□□□ 1.1
CIITAP33076 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CIITAP33076 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CIITAP33076 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
CIITAP33076 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.92■■□□□ 1.1
CIITAP33076 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.92■■□□□ 1.1
CIITAP33076 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CIITAP33076 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CIITAP33076 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
CIITAP33076 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
CIITAP33076 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CIITAP33076 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CIITAP33076 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.91■■□□□ 1.1
CIITAP33076 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
CIITAP33076 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
CIITAP33076 KRT8P41-201ENST00000533985 1514 ntBASIC21.91■■□□□ 1.1
CIITAP33076 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CIITAP33076 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CIITAP33076 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
CIITAP33076 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CIITAP33076 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CIITAP33076 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.91■■□□□ 1.1
CIITAP33076 AC008040.2-201ENST00000461049 708 ntBASIC21.91■■□□□ 1.1
CIITAP33076 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.91■■□□□ 1.1
CIITAP33076 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.91■■□□□ 1.1
CIITAP33076 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.91■■□□□ 1.1
CIITAP33076 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CIITAP33076 AFG3L1P-217ENST00000557444 2447 ntBASIC21.91■■□□□ 1.1
CIITAP33076 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CIITAP33076 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CIITAP33076 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CIITAP33076 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CIITAP33076 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CIITAP33076 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
CIITAP33076 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CIITAP33076 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.9■■□□□ 1.1
CIITAP33076 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.9■■□□□ 1.1
CIITAP33076 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CIITAP33076 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.9■■□□□ 1.1
CIITAP33076 RBM17P1-201ENST00000453646 1190 ntBASIC21.9■■□□□ 1.1
CIITAP33076 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.9■■□□□ 1.1
CIITAP33076 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.9■■□□□ 1.1
CIITAP33076 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
CIITAP33076 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.9■■□□□ 1.1
CIITAP33076 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CIITAP33076 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.9■■□□□ 1.1
CIITAP33076 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.9■■□□□ 1.1
CIITAP33076 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.9■■□□□ 1.1
CIITAP33076 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.9■■□□□ 1.1
CIITAP33076 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CIITAP33076 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CIITAP33076 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CIITAP33076 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CIITAP33076 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CIITAP33076 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
CIITAP33076 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CIITAP33076 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CIITAP33076 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
CIITAP33076 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.89■■□□□ 1.09
CIITAP33076 AC004951.3-201ENST00000418645 1148 ntBASIC21.89■■□□□ 1.09
CIITAP33076 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.89■■□□□ 1.09
CIITAP33076 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.89■■□□□ 1.09
CIITAP33076 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms