Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 AC004408.2-201ENST00000623613 2777 ntBASIC19.02■□□□□ 0.64
VPS4BO75351 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS4BO75351 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS4BO75351 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS4BO75351 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS4BO75351 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS4BO75351 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS4BO75351 CYP2T3P-201ENST00000601990 817 ntBASIC19.02■□□□□ 0.64
VPS4BO75351 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
VPS4BO75351 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.02■□□□□ 0.63
VPS4BO75351 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS4BO75351 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS4BO75351 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VPS4BO75351 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
VPS4BO75351 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
VPS4BO75351 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS4BO75351 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS4BO75351 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS4BO75351 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.01■□□□□ 0.63
VPS4BO75351 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.01■□□□□ 0.63
VPS4BO75351 REXO1L12P-201ENST00000622156 912 ntBASIC19.01■□□□□ 0.63
VPS4BO75351 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS4BO75351 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS4BO75351 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS4BO75351 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS4BO75351 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19■□□□□ 0.63
VPS4BO75351 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS4BO75351 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19■□□□□ 0.63
VPS4BO75351 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19■□□□□ 0.63
VPS4BO75351 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19■□□□□ 0.63
VPS4BO75351 C1QBPP2-201ENST00000528754 825 ntBASIC19■□□□□ 0.63
VPS4BO75351 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
VPS4BO75351 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS4BO75351 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS4BO75351 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VPS4BO75351 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS4BO75351 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
VPS4BO75351 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
VPS4BO75351 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
VPS4BO75351 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VPS4BO75351 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
VPS4BO75351 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS4BO75351 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.99■□□□□ 0.63
VPS4BO75351 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.99■□□□□ 0.63
VPS4BO75351 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
VPS4BO75351 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS4BO75351 LINC01023-201ENST00000606054 436 ntBASIC18.99■□□□□ 0.63
VPS4BO75351 AC010331.1-201ENST00000611423 582 ntBASIC18.99■□□□□ 0.63
VPS4BO75351 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS4BO75351 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
VPS4BO75351 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms