Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
SGCEO43556 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
SGCEO43556 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.15■□□□□ 0.34
SGCEO43556 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.15■□□□□ 0.34
SGCEO43556 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
SGCEO43556 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
SGCEO43556 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.14■□□□□ 0.34
SGCEO43556 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SGCEO43556 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SGCEO43556 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
SGCEO43556 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SGCEO43556 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.14■□□□□ 0.33
SGCEO43556 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
SGCEO43556 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SGCEO43556 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.14■□□□□ 0.33
SGCEO43556 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.14■□□□□ 0.33
SGCEO43556 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.14■□□□□ 0.33
SGCEO43556 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.14■□□□□ 0.33
SGCEO43556 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.14■□□□□ 0.33
SGCEO43556 AL121829.2-201ENST00000620908 328 ntBASIC17.14■□□□□ 0.33
SGCEO43556 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SGCEO43556 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC17.14■□□□□ 0.33
SGCEO43556 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SGCEO43556 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.13■□□□□ 0.33
SGCEO43556 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SGCEO43556 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SGCEO43556 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 AP006587.1-201ENST00000534129 1502 ntBASIC17.13■□□□□ 0.33
SGCEO43556 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.13■□□□□ 0.33
SGCEO43556 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.13■□□□□ 0.33
SGCEO43556 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.13■□□□□ 0.33
SGCEO43556 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.13■□□□□ 0.33
SGCEO43556 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.13■□□□□ 0.33
SGCEO43556 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.13■□□□□ 0.33
SGCEO43556 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
SGCEO43556 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SGCEO43556 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.13■□□□□ 0.33
SGCEO43556 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.12■□□□□ 0.33
SGCEO43556 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
SGCEO43556 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.12■□□□□ 0.33
SGCEO43556 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.12■□□□□ 0.33
SGCEO43556 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.12■□□□□ 0.33
SGCEO43556 POM121L13P-201ENST00000422362 380 ntBASIC17.12■□□□□ 0.33
SGCEO43556 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.12■□□□□ 0.33
SGCEO43556 KRT18P6-201ENST00000555540 1265 ntBASIC17.12■□□□□ 0.33
SGCEO43556 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SGCEO43556 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms