Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CBX4O00257 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.88■□□□□ 0.77
CBX4O00257 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
CBX4O00257 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.88■□□□□ 0.77
CBX4O00257 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.88■□□□□ 0.77
CBX4O00257 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.88■□□□□ 0.77
CBX4O00257 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.88■□□□□ 0.77
CBX4O00257 LINC01023-201ENST00000606054 436 ntBASIC19.88■□□□□ 0.77
CBX4O00257 AC010331.1-201ENST00000611423 582 ntBASIC19.88■□□□□ 0.77
CBX4O00257 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.88■□□□□ 0.77
CBX4O00257 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.88■□□□□ 0.77
CBX4O00257 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.88■□□□□ 0.77
CBX4O00257 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CBX4O00257 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.87■□□□□ 0.77
CBX4O00257 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.87■□□□□ 0.77
CBX4O00257 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 KRT16P1-201ENST00000399124 1418 ntBASIC19.87■□□□□ 0.77
CBX4O00257 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CBX4O00257 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.87■□□□□ 0.77
CBX4O00257 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.87■□□□□ 0.77
CBX4O00257 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.87■□□□□ 0.77
CBX4O00257 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.87■□□□□ 0.77
CBX4O00257 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.87■□□□□ 0.77
CBX4O00257 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
CBX4O00257 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CBX4O00257 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.87■□□□□ 0.77
CBX4O00257 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CBX4O00257 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.87■□□□□ 0.77
CBX4O00257 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
CBX4O00257 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CBX4O00257 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.86■□□□□ 0.77
CBX4O00257 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.86■□□□□ 0.77
CBX4O00257 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.86■□□□□ 0.77
CBX4O00257 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
CBX4O00257 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CBX4O00257 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CBX4O00257 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
CBX4O00257 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
CBX4O00257 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.86■□□□□ 0.77
CBX4O00257 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
CBX4O00257 AFG3L1P-217ENST00000557444 2447 ntBASIC19.85■□□□□ 0.77
CBX4O00257 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.85■□□□□ 0.77
CBX4O00257 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.85■□□□□ 0.77
CBX4O00257 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.85■□□□□ 0.77
CBX4O00257 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
CBX4O00257 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CBX4O00257 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CBX4O00257 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CBX4O00257 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CBX4O00257 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CBX4O00257 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CBX4O00257 AL355355.2-201ENST00000442321 338 ntBASIC19.85■□□□□ 0.77
CBX4O00257 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.85■□□□□ 0.77
CBX4O00257 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.85■□□□□ 0.77
CBX4O00257 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CBX4O00257 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.85■□□□□ 0.77
CBX4O00257 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.85■□□□□ 0.77
CBX4O00257 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CBX4O00257 MIR4785-201ENST00000585005 73 ntBASIC19.85■□□□□ 0.77
CBX4O00257 AL445675.2-201ENST00000620291 557 ntBASIC19.85■□□□□ 0.77
CBX4O00257 HLA-A-209ENST00000638375 975 ntBASIC19.85■□□□□ 0.77
CBX4O00257 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CBX4O00257 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.85■□□□□ 0.77
CBX4O00257 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.85■□□□□ 0.77
CBX4O00257 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CBX4O00257 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CBX4O00257 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.84■□□□□ 0.77
CBX4O00257 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CBX4O00257 KRT17P2-201ENST00000300992 1314 ntBASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms