Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 RNU6-252P-201ENST00000363232 107 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 SNORD113.2-201ENST00000364166 89 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 SNORA70.2-201ENST00000364506 135 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AL356967.1-201ENST00000406305 431 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 RNU2-17P-201ENST00000410290 190 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC104333.2-201ENST00000422630 192 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 RPL23AP1-201ENST00000428990 471 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AP000936.3-201ENST00000438127 255 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 NPM1P39-201ENST00000449818 867 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 HMGB1P5-202ENST00000451497 985 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 CLIC4P1-201ENST00000453177 535 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 MTND2P39-201ENST00000457230 764 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 MTND2P28-201ENST00000457540 1044 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 RN7SL517P-201ENST00000462240 305 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 MTND3P3-201ENST00000505004 126 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC091868.1-201ENST00000508746 304 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC019227.1-201ENST00000526902 510 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 PARP1P2-201ENST00000556806 195 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 RN7SL802P-201ENST00000577858 299 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 SUMO2P14-201ENST00000604488 293 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC006213.4-201ENST00000616184 634 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC068880.4-201ENST00000623082 495 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC104260.2-201ENST00000623551 3497 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AL442639.1-201ENST00000625030 1899 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC025574.1-201ENST00000554784 1653 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 AC027290.2-201ENST00000623210 18662 ntBASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AL136164.3-201ENST00000624429 3978 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AC009643.2-201ENST00000603543 1448 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AC139713.2-214ENST00000642059 1811 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 IGKV7-3-201ENST00000357453 298 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AC068538.1-201ENST00000376856 336 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 ATG4AP1-201ENST00000416893 538 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 HMGN2P27-201ENST00000427352 270 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 CYCSP11-201ENST00000436426 315 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 RNFT1P2-201ENST00000443064 757 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AL591363.1-201ENST00000450091 483 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 RPL10P17-201ENST00000453852 316 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AL356981.1-201ENST00000454879 684 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 PSMC1P13-201ENST00000458195 985 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 IGBP1P5-201ENST00000507524 1000 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 RNU1-6P-201ENST00000516290 144 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 MIR5699-201ENST00000578903 90 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AC144521.1-201ENST00000607148 956 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AL445423.1-201ENST00000609941 536 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms