Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 CR848007.2-201ENST00000424918 787 ntBASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 TPT1P3-201ENST00000492841 512 ntBASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 HMGB1P47-201ENST00000511281 589 ntBASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 ACTR6P1-201ENST00000514311 1104 ntBASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 FAM106CP-201ENST00000582212 507 ntBASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 AL162233.1-201ENST00000620014 944 ntBASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
SHROOM4Q9ULL8 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AC135352.1-201ENST00000506173 1418 ntBASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 MTCYBP7-201ENST00000419540 1134 ntBASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 HMGB3P10-201ENST00000434734 572 ntBASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 BTF3P6-201ENST00000448054 499 ntBASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 RHEBP2-201ENST00000450289 600 ntBASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 OR2L1P-202ENST00000641567 1023 ntBASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AC025031.4-201ENST00000621248 3271 ntBASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AL121950.1-201ENST00000624993 2077 ntBASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AC112198.2-201ENST00000426589 6996 ntBASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC8.66□□□□□ -1.02
SHROOM4Q9ULL8 AL391684.1-202ENST00000641293 1636 ntBASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 SNORA63.1-201ENST00000362493 131 ntBASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 RNA5SP387-201ENST00000364226 106 ntBASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 SNORA27.3-201ENST00000364937 134 ntBASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AL356095.1-201ENST00000417217 199 ntBASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 Z99127.2-201ENST00000441426 334 ntBASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 CYCSP24-201ENST00000445119 316 ntBASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AC105137.1-201ENST00000484355 562 ntBASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AC087272.1-201ENST00000523624 533 ntBASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AC092376.2-201ENST00000622621 4116 ntBASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
SHROOM4Q9ULL8 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC8.65□□□□□ -1.03
SHROOM4Q9ULL8 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC8.65□□□□□ -1.03
SHROOM4Q9ULL8 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC8.65□□□□□ -1.03
SHROOM4Q9ULL8 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 RNU1-130P-201ENST00000363930 160 ntBASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 MIR421-201ENST00000365696 85 ntBASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 RPS7P7-201ENST00000463499 571 ntBASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 MIR3944-201ENST00000581277 108 ntBASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 IGKV1OR2-118-201ENST00000603238 347 ntBASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 AC004656.1-201ENST00000568479 4951 ntBASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms