RNA–Protein interactions for RNA: ENST00000504409.3

LINC02397-201, Transcript of long intergenic non-protein coding RNA 2397, humanhuman

TSL 1 (best) BASIC

Gene LINC02397, Length 10,626 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02397-201ENST00000504409 MYT1Q01538 1121 aa10.82□□□□□ -0.68
LINC02397-201ENST00000504409 PELP1Q8IZL8 1130 aaKnown RBP10.57□□□□□ -0.72
LINC02397-201ENST00000504409 TTBK1Q5TCY1 1321 aaPredicted RBP10.19□□□□□ -0.78
LINC02397-201ENST00000504409 ZEB1P37275 1124 aaPredicted RBP9.72□□□□□ -0.85
LINC02397-201ENST00000504409 CCER1Q8TC90 406 aaPredicted RBP9.6□□□□□ -0.87
LINC02397-201ENST00000504409 YTHDC1Q96MU7 727 aaKnown RBP9.59□□□□□ -0.87
LINC02397-201ENST00000504409 NISCHQ9Y2I1 1504 aa9.57□□□□□ -0.88
LINC02397-201ENST00000504409 CENPBP07199 599 aaPredicted RBP9.55□□□□□ -0.88
LINC02397-201ENST00000504409 ERICH6Q7L0X2 663 aa9.48□□□□□ -0.89
LINC02397-201ENST00000504409 CLSPNQ9HAW4 1339 aa9.39□□□□□ -0.91
LINC02397-201ENST00000504409 MYT1LQ9UL68 1186 aa9.33□□□□□ -0.92
LINC02397-201ENST00000504409 HRCP23327 699 aa9.05□□□□□ -0.96
LINC02397-201ENST00000504409 NEFLP07196 543 aa9.01□□□□□ -0.97
LINC02397-201ENST00000504409 GLIPR1L2Q4G1C9 344 aa8.99□□□□□ -0.97
LINC02397-201ENST00000504409 FAM9AQ8IZU1 332 aaPredicted RBP8.95□□□□□ -0.98
LINC02397-201ENST00000504409 TRIM26Q12899 539 aaPredicted RBP8.9□□□□□ -0.99
LINC02397-201ENST00000504409 CCDC180Q9P1Z9 1646 aa8.83□□□□□ -1
LINC02397-201ENST00000504409 APLP2Q06481 763 aa8.82□□□□□ -1
LINC02397-201ENST00000504409 DCAF1Q9Y4B6 1507 aa8.81□□□□□ -1
LINC02397-201ENST00000504409 RTL5Q5HYW3 569 aaPredicted RBP8.8□□□□□ -1
LINC02397-201ENST00000504409 PCGF6Q9BYE7 350 aa8.74□□□□□ -1.01
LINC02397-201ENST00000504409 EHMT2Q96KQ7 1210 aa8.73□□□□□ -1.01
LINC02397-201ENST00000504409 RANGAP1P46060 587 aaPredicted RBP8.73□□□□□ -1.01
LINC02397-201ENST00000504409 DAXXQ9UER7 740 aaPredicted RBP8.7□□□□□ -1.02
LINC02397-201ENST00000504409 SHROOM4Q9ULL8 1493 aa8.66□□□□□ -1.02
LINC02397-201ENST00000504409 ARID4BQ4LE39 1312 aaPredicted RBP8.66□□□□□ -1.02
LINC02397-201ENST00000504409 NCLP19338 710 aaKnown RBP8.61□□□□□ -1.03
LINC02397-201ENST00000504409 ACIN1Q9UKV3 1341 aaKnown RBP8.59□□□□□ -1.03
LINC02397-201ENST00000504409 SUPT5HO00267 1087 aaKnown RBP8.59□□□□□ -1.03
LINC02397-201ENST00000504409 ERICH6BQ5W0A0 696 aa8.58□□□□□ -1.04
LINC02397-201ENST00000504409 ANP32EQ9BTT0 268 aa8.57□□□□□ -1.04
LINC02397-201ENST00000504409 DIEXFQ68CQ4 756 aaKnown RBP8.52□□□□□ -1.05
LINC02397-201ENST00000504409 CDK11AQ9UQ88 783 aaPredicted RBP8.51□□□□□ -1.05
LINC02397-201ENST00000504409 ZNF316A6NFI3 1004 aaPredicted RBP8.48□□□□□ -1.05
LINC02397-201ENST00000504409 EIF5BO60841 1220 aaKnown RBP8.47□□□□□ -1.05
LINC02397-201ENST00000504409 ANP32AP39687 249 aaKnown RBP8.46□□□□□ -1.05
LINC02397-201ENST00000504409 TRIM44Q96DX7 344 aaPredicted RBP8.45□□□□□ -1.06
LINC02397-201ENST00000504409 ANP32BQ92688 251 aaKnown RBP8.42□□□□□ -1.06
LINC02397-201ENST00000504409 TNNT2P45379 298 aaPredicted RBP8.42□□□□□ -1.06
LINC02397-201ENST00000504409 GTF3C3Q9Y5Q9 886 aa8.4□□□□□ -1.06
LINC02397-201ENST00000504409 NEUROD1Q13562 356 aa8.4□□□□□ -1.06
LINC02397-201ENST00000504409 ZNF326Q5BKZ1 582 aaKnown RBP8.4□□□□□ -1.06
LINC02397-201ENST00000504409 TRIM41Q8WV44 630 aa8.39□□□□□ -1.07
LINC02397-201ENST00000504409 SLC24A1O60721 1099 aa8.34□□□□□ -1.07
LINC02397-201ENST00000504409 DCAF8L2P0C7V8 631 aa8.32□□□□□ -1.08
LINC02397-201ENST00000504409 DDRGK1Q96HY6 314 aa8.32□□□□□ -1.08
LINC02397-201ENST00000504409 EEA1Q15075 1411 aa8.29□□□□□ -1.08
LINC02397-201ENST00000504409 PPM1GO15355 546 aaPredicted RBP8.27□□□□□ -1.09
LINC02397-201ENST00000504409 POLR3GLQ9BT43 218 aa8.27□□□□□ -1.09
LINC02397-201ENST00000504409 PTMSP20962 102 aa8.26□□□□□ -1.09
LINC02397-201ENST00000504409 LAS1LQ9Y4W2 734 aaKnown RBP8.26□□□□□ -1.09
LINC02397-201ENST00000504409 USP35Q9P2H5 1018 aa8.26□□□□□ -1.09
LINC02397-201ENST00000504409 CHIC1Q5VXU3 224 aa8.24□□□□□ -1.09
LINC02397-201ENST00000504409 ANP32CO43423 234 aa8.24□□□□□ -1.09
LINC02397-201ENST00000504409 BCL11AQ9H165 835 aa8.22□□□□□ -1.09
LINC02397-201ENST00000504409 RSPH6AQ9H0K4 717 aa8.22□□□□□ -1.09
LINC02397-201ENST00000504409 UPF2Q9HAU5 1272 aaKnown RBP8.21□□□□□ -1.09
LINC02397-201ENST00000504409 NEFMP07197 916 aa8.19□□□□□ -1.1
LINC02397-201ENST00000504409 L1TD1Q5T7N2 865 aaKnown RBP8.17□□□□□ -1.1
LINC02397-201ENST00000504409 ZBTB47Q9UFB7 747 aaPredicted RBP8.16□□□□□ -1.1
LINC02397-201ENST00000504409 MTERF4Q7Z6M4 381 aaKnown RBP8.15□□□□□ -1.1
LINC02397-201ENST00000504409 BECN1Q14457 450 aa8.15□□□□□ -1.1
LINC02397-201ENST00000504409 SCAF1Q9H7N4 1312 aaKnown RBP8.15□□□□□ -1.11
LINC02397-201ENST00000504409 TIMELESSQ9UNS1 1208 aa8.15□□□□□ -1.11
LINC02397-201ENST00000504409 CFAP44Q96MT7 982 aa8.14□□□□□ -1.11
LINC02397-201ENST00000504409 ZCCHC6Q5VYS8 1495 aaKnown RBP8.13□□□□□ -1.11
LINC02397-201ENST00000504409 CDK11BP21127 795 aaKnown RBP8.12□□□□□ -1.11
LINC02397-201ENST00000504409 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.09□□□□□ -1.11
LINC02397-201ENST00000504409 CALRP27797 417 aaKnown RBP8.09□□□□□ -1.11
LINC02397-201ENST00000504409 MAP7D2Q96T17 732 aa8.09□□□□□ -1.11
LINC02397-201ENST00000504409 UBTFP17480 764 aaKnown RBP8.08□□□□□ -1.12
LINC02397-201ENST00000504409 GOLGA6L22H0YM25 854 aa8.08□□□□□ -1.12
LINC02397-201ENST00000504409 HMGB1P09429 215 aaKnown RBP8.07□□□□□ -1.12
LINC02397-201ENST00000504409 TAF3Q5VWG9 929 aa8.07□□□□□ -1.12
LINC02397-201ENST00000504409 A0A0U1RQG5 324 aaPredicted RBP8.04□□□□□ -1.12
LINC02397-201ENST00000504409 FANCIQ9NVI1 1328 aa8.04□□□□□ -1.12
LINC02397-201ENST00000504409 PNNQ9H307 717 aaKnown RBP8.04□□□□□ -1.12
LINC02397-201ENST00000504409 NOP58Q9Y2X3 529 aaKnown RBP8.03□□□□□ -1.12
LINC02397-201ENST00000504409 CCER2I3L3R5 266 aa8.02□□□□□ -1.13
LINC02397-201ENST00000504409 HSP90AA1P07900 732 aaKnown RBP8.01□□□□□ -1.13
LINC02397-201ENST00000504409 BAZ1AQ9NRL2 1556 aaPredicted RBP8.01□□□□□ -1.13
LINC02397-201ENST00000504409 CHAF1AQ13111 956 aaPredicted RBP8□□□□□ -1.13
LINC02397-201ENST00000504409 ISY1Q9ULR0 285 aaKnown RBP8□□□□□ -1.13
LINC02397-201ENST00000504409 CHMP4BQ9H444 224 aaKnown RBP7.99□□□□□ -1.13
LINC02397-201ENST00000504409 GOLGA3Q08378 1498 aa7.99□□□□□ -1.13
LINC02397-201ENST00000504409 GOLGA6L3A6NEY3 463 aa7.98□□□□□ -1.13
LINC02397-201ENST00000504409 CNGB1Q14028 1251 aaPredicted RBP7.98□□□□□ -1.13
LINC02397-201ENST00000504409 PPP4R2Q9NY27 417 aa7.97□□□□□ -1.13
LINC02397-201ENST00000504409 RB1CC1Q8TDY2 1594 aa7.97□□□□□ -1.13
LINC02397-201ENST00000504409 GOLGA6L6A8MZA4 724 aa7.96□□□□□ -1.13
LINC02397-201ENST00000504409 NRDCO43847 1150 aa7.96□□□□□ -1.14
LINC02397-201ENST00000504409 PPARGC1BQ86YN6 1023 aaKnown RBP7.95□□□□□ -1.14
LINC02397-201ENST00000504409 FKBP8Q14318 412 aa7.93□□□□□ -1.14
LINC02397-201ENST00000504409 TSPYL1Q9H0U9 437 aa7.93□□□□□ -1.14
LINC02397-201ENST00000504409 PHLDB1Q86UU1 1377 aa7.92□□□□□ -1.14
LINC02397-201ENST00000504409 MYO15BQ96JP2 1530 aa7.92□□□□□ -1.14
LINC02397-201ENST00000504409 CCDC136Q96JN2 1154 aa7.92□□□□□ -1.14
LINC02397-201ENST00000504409 TONSLQ96HA7 1378 aa7.91□□□□□ -1.14
LINC02397-201ENST00000504409 WRNQ14191 1432 aaPredicted RBP eCLIP7.91□□□□□ -1.14
LINC02397-201ENST00000504409 MS4A1P11836 297 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms