Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC092754.1-201ENST00000472975 479 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 RPS4XP20-201ENST00000505751 772 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 DUXAP1-201ENST00000556632 463 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 NPM1P47-201ENST00000560843 856 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 MIR4646-201ENST00000580775 63 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 VN1R88P-201ENST00000596787 292 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC011453.2-201ENST00000603737 729 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AP002799.1-201ENST00000623552 423 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AP003497.2-201ENST00000624220 967 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 LINC01739-205ENST00000641890 573 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 BCORP1-203ENST00000513194 5093 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC104964.3-201ENST00000606115 2860 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 MSL3P1-202ENST00000440028 1468 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AL353796.1-201ENST00000561542 3241 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AL078621.3-201ENST00000623707 2042 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 RNU4-4P-201ENST00000364588 130 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 MIR550A3-201ENST00000390735 95 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 HSPA8P15-201ENST00000401676 786 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 REREP1Y-201ENST00000422655 198 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 REREP2Y-201ENST00000439103 200 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 REG1CP-206ENST00000447469 496 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC079776.3-201ENST00000450665 370 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 snoU13.29-201ENST00000459370 104 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 BX284632.1-201ENST00000478218 541 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 RPS3AP43-201ENST00000479743 781 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 RN7SKP66-201ENST00000516681 231 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 RNA5SP373-201ENST00000517271 95 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 HMGB1P23-201ENST00000518743 568 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 PTK2-220ENST00000520151 573 ntTSL 4 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC090819.1-201ENST00000523800 1111 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC133644.2-201ENST00000608142 540 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC073869.8-201ENST00000641806 335 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 AC114947.2-201ENST00000565748 2125 ntBASIC5.57□□□□□ -1.52
TDP1Q9NUW8 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.57□□□□□ -1.52
TDP1Q9NUW8 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
TDP1Q9NUW8 RNU6-560P-201ENST00000364007 108 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms