RNA–Protein interactions for RNA: ENST00000364007.1

RNU6-560P-201, Transcript of RNA, U6 small nuclear 560, pseudogene, humanhuman

BASIC

Gene RNU6-560P, Length 108 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-560P-201ENST00000364007 AEBP2Q6ZN18 517 aaPredicted RBP21.31■■□□□ 1
RNU6-560P-201ENST00000364007 CHIC1Q5VXU3 224 aa20.97■□□□□ 0.95
RNU6-560P-201ENST00000364007 PHF23Q9BUL5 403 aaPredicted RBP18.53■□□□□ 0.56
RNU6-560P-201ENST00000364007 SENP3Q9H4L4 574 aaPredicted RBP17.95■□□□□ 0.46
RNU6-560P-201ENST00000364007 PLPPR3Q6T4P5 718 aa17.09■□□□□ 0.33
RNU6-560P-201ENST00000364007 FOXD1Q16676 465 aa16.71■□□□□ 0.27
RNU6-560P-201ENST00000364007 PPP6R1Q9UPN7 881 aa16.3■□□□□ 0.2
RNU6-560P-201ENST00000364007 ADRA2BP18089 450 aa16.29■□□□□ 0.2
RNU6-560P-201ENST00000364007 PIAS4Q8N2W9 510 aaPredicted RBP15.78■□□□□ 0.12
RNU6-560P-201ENST00000364007 MSH5O43196 834 aa15.23■□□□□ 0.03
RNU6-560P-201ENST00000364007 PPP4R3CPQ6ZMV5 832 aa15.14■□□□□ 0.01
RNU6-560P-201ENST00000364007 KCNA4P22459 653 aa15.06■□□□□ 0
RNU6-560P-201ENST00000364007 SCAF1Q9H7N4 1312 aaKnown RBP14.78□□□□□ -0.04
RNU6-560P-201ENST00000364007 MAPK8IP2Q13387 824 aaPredicted RBP14.74□□□□□ -0.05
RNU6-560P-201ENST00000364007 NCBP3Q53F19 620 aaKnown RBP14.73□□□□□ -0.05
RNU6-560P-201ENST00000364007 CNKSR2Q8WXI2 1034 aa14.62□□□□□ -0.07
RNU6-560P-201ENST00000364007 NPM3O75607 178 aaKnown RBP14.59□□□□□ -0.07
RNU6-560P-201ENST00000364007 DMRT2Q9Y5R5 561 aa14.38□□□□□ -0.11
RNU6-560P-201ENST00000364007 SLC4A1APQ9BWU0 796 aaKnown RBP14.34□□□□□ -0.11
RNU6-560P-201ENST00000364007 RNF216Q9NWF9 866 aaPredicted RBP14.28□□□□□ -0.12
RNU6-560P-201ENST00000364007 EHMT2Q96KQ7 1210 aa14.23□□□□□ -0.13
RNU6-560P-201ENST00000364007 HOXD11P31277 338 aaPredicted RBP14.18□□□□□ -0.14
RNU6-560P-201ENST00000364007 DNAJC5BQ9UF47 199 aa14.04□□□□□ -0.16
RNU6-560P-201ENST00000364007 CSRNP3Q8WYN3 585 aa13.98□□□□□ -0.17
RNU6-560P-201ENST00000364007 ZBTB22O15209 634 aa13.88□□□□□ -0.19
RNU6-560P-201ENST00000364007 DCAF8L1A6NGE4 600 aa13.79□□□□□ -0.2
RNU6-560P-201ENST00000364007 SLC4A2P04920 1241 aa13.75□□□□□ -0.21
RNU6-560P-201ENST00000364007 FOXD4L1Q9NU39 408 aa13.74□□□□□ -0.21
RNU6-560P-201ENST00000364007 POTEDQ86YR6 584 aa13.56□□□□□ -0.24
RNU6-560P-201ENST00000364007 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.52□□□□□ -0.25
RNU6-560P-201ENST00000364007 MYCNP04198 464 aaPredicted RBP13.42□□□□□ -0.26
RNU6-560P-201ENST00000364007 U3KPZ7 1027 aaPredicted RBP13.34□□□□□ -0.27
RNU6-560P-201ENST00000364007 ATXN8OSP0DMR3 200 aa13.19□□□□□ -0.3
RNU6-560P-201ENST00000364007 ATF5Q9Y2D1 282 aaPredicted RBP13.16□□□□□ -0.3
RNU6-560P-201ENST00000364007 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.14□□□□□ -0.31
RNU6-560P-201ENST00000364007 HNRNPUL2Q1KMD3 747 aaKnown RBP13.14□□□□□ -0.31
RNU6-560P-201ENST00000364007 SAMD1Q6SPF0 538 aaPredicted RBP13.14□□□□□ -0.31
RNU6-560P-201ENST00000364007 RNF39Q9H2S5 420 aa13.11□□□□□ -0.31
RNU6-560P-201ENST00000364007 APLP2Q06481 763 aa12.94□□□□□ -0.34
RNU6-560P-201ENST00000364007 C1QBPQ07021 282 aaKnown RBP12.94□□□□□ -0.34
RNU6-560P-201ENST00000364007 SPINK5Q9NQ38 1064 aaPredicted RBP12.94□□□□□ -0.34
RNU6-560P-201ENST00000364007 ZNF219Q9P2Y4 722 aaPredicted RBP12.86□□□□□ -0.35
RNU6-560P-201ENST00000364007 TRHP20396 242 aaPredicted RBP12.85□□□□□ -0.35
RNU6-560P-201ENST00000364007 CAPN15O75808 1086 aa12.84□□□□□ -0.35
RNU6-560P-201ENST00000364007 POLA2Q14181 598 aa12.69□□□□□ -0.38
RNU6-560P-201ENST00000364007 ABCB7O75027 752 aa12.65□□□□□ -0.38
RNU6-560P-201ENST00000364007 CACNB1Q02641 598 aaPredicted RBP12.63□□□□□ -0.39
RNU6-560P-201ENST00000364007 FKBP8Q14318 412 aa12.6□□□□□ -0.39
RNU6-560P-201ENST00000364007 DSG3P32926 999 aa12.57□□□□□ -0.4
RNU6-560P-201ENST00000364007 MKRN4PQ13434 485 aaPredicted RBP12.57□□□□□ -0.4
RNU6-560P-201ENST00000364007 FBLN2P98095 1184 aa12.48□□□□□ -0.41
RNU6-560P-201ENST00000364007 ZBTB12Q9Y330 459 aaPredicted RBP12.38□□□□□ -0.43
RNU6-560P-201ENST00000364007 SPDYE4A6NLX3 237 aa12.35□□□□□ -0.43
RNU6-560P-201ENST00000364007 OSCARQ8IYS5 282 aa12.24□□□□□ -0.45
RNU6-560P-201ENST00000364007 PROM2Q8N271 834 aa12.16□□□□□ -0.46
RNU6-560P-201ENST00000364007 ZNF692Q9BU19 519 aaPredicted RBP12.15□□□□□ -0.46
RNU6-560P-201ENST00000364007 SPDYE2BA6NHP3 402 aa12.11□□□□□ -0.47
RNU6-560P-201ENST00000364007 SPDYE6P0CI01 402 aa12.11□□□□□ -0.47
RNU6-560P-201ENST00000364007 SPDYE2Q495Y8 402 aa12.11□□□□□ -0.47
RNU6-560P-201ENST00000364007 SSUH2Q9Y2M2 353 aa12.06□□□□□ -0.48
RNU6-560P-201ENST00000364007 FBXO3Q9UK99 471 aa12.01□□□□□ -0.49
RNU6-560P-201ENST00000364007 PABPN1Q86U42 306 aaKnown RBP eCLIP12□□□□□ -0.49
RNU6-560P-201ENST00000364007 RBM42Q9BTD8 480 aaKnown RBP11.9□□□□□ -0.5
RNU6-560P-201ENST00000364007 VASPP50552 380 aaPredicted RBP11.88□□□□□ -0.51
RNU6-560P-201ENST00000364007 RTN4Q9NQC3 1192 aaKnown RBP11.87□□□□□ -0.51
RNU6-560P-201ENST00000364007 AKT1S1Q96B36 256 aa11.83□□□□□ -0.52
RNU6-560P-201ENST00000364007 AMER1Q5JTC6 1135 aaPredicted RBP11.8□□□□□ -0.52
RNU6-560P-201ENST00000364007 STAG3Q9UJ98 1225 aa11.8□□□□□ -0.52
RNU6-560P-201ENST00000364007 IFNLR1Q8IU57 520 aaPredicted RBP11.79□□□□□ -0.52
RNU6-560P-201ENST00000364007 REM2Q8IYK8 340 aaPredicted RBP11.76□□□□□ -0.53
RNU6-560P-201ENST00000364007 MIER1Q8N108 512 aa11.71□□□□□ -0.53
RNU6-560P-201ENST00000364007 SPDYE1Q8NFV5 336 aaPredicted RBP11.71□□□□□ -0.53
RNU6-560P-201ENST00000364007 CLEC11AQ9Y240 323 aa11.71□□□□□ -0.53
RNU6-560P-201ENST00000364007 PLCD3Q8N3E9 789 aa11.69□□□□□ -0.54
RNU6-560P-201ENST00000364007 KLHL34Q8N239 644 aa11.65□□□□□ -0.54
RNU6-560P-201ENST00000364007 PITPNM1O00562 1244 aa11.63□□□□□ -0.55
RNU6-560P-201ENST00000364007 PRR29P0C7W0 189 aa11.61□□□□□ -0.55
RNU6-560P-201ENST00000364007 SPOCK2Q92563 424 aa11.56□□□□□ -0.56
RNU6-560P-201ENST00000364007 PLEKHG5O94827 1062 aa11.54□□□□□ -0.56
RNU6-560P-201ENST00000364007 CREBZFQ9NS37 354 aa11.53□□□□□ -0.56
RNU6-560P-201ENST00000364007 PKD2Q13563 968 aa11.48□□□□□ -0.57
RNU6-560P-201ENST00000364007 ZBTB47Q9UFB7 747 aaPredicted RBP11.47□□□□□ -0.57
RNU6-560P-201ENST00000364007 MNX1P50219 401 aaPredicted RBP11.44□□□□□ -0.58
RNU6-560P-201ENST00000364007 CHADLQ6NUI6 762 aa11.43□□□□□ -0.58
RNU6-560P-201ENST00000364007 NUBP1P53384 320 aa11.38□□□□□ -0.59
RNU6-560P-201ENST00000364007 CIZ1Q9ULV3 898 aaPredicted RBP11.38□□□□□ -0.59
RNU6-560P-201ENST00000364007 CHRDL2Q6WN34 429 aa11.37□□□□□ -0.59
RNU6-560P-201ENST00000364007 FXR2P51116 673 aaKnown RBP eCLIP11.36□□□□□ -0.59
RNU6-560P-201ENST00000364007 ECM2O94769 699 aaPredicted RBP11.34□□□□□ -0.59
RNU6-560P-201ENST00000364007 PRKAR2AP13861 404 aaKnown RBP11.33□□□□□ -0.6
RNU6-560P-201ENST00000364007 DCAF8Q5TAQ9 597 aa11.31□□□□□ -0.6
RNU6-560P-201ENST00000364007 RASEFQ8IZ41 740 aa11.3□□□□□ -0.6
RNU6-560P-201ENST00000364007 PIP4P2Q8N4L2 257 aa11.29□□□□□ -0.6
RNU6-560P-201ENST00000364007 FARP1Q9Y4F1 1045 aaPredicted RBP11.29□□□□□ -0.6
RNU6-560P-201ENST00000364007 NPM1P06748 294 aaKnown RBP eCLIP11.28□□□□□ -0.6
RNU6-560P-201ENST00000364007 DCAF8L2P0C7V8 631 aa11.27□□□□□ -0.61
RNU6-560P-201ENST00000364007 GSE1Q14687 1217 aa11.26□□□□□ -0.61
RNU6-560P-201ENST00000364007 RGL2O15211 777 aa11.25□□□□□ -0.61
RNU6-560P-201ENST00000364007 FAM212AQ96EL1 285 aa11.23□□□□□ -0.61
RNU6-560P-201ENST00000364007 TSPYL2Q9H2G4 693 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms