Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC004453.1-201ENST00000487895 408 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AL049874.2-201ENST00000492636 288 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 RN7SL244P-201ENST00000493405 297 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.9□□□□□ -1.46
SMARCA1P28370 COX6B1P5-201ENST00000509843 249 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
SMARCA1P28370 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.9□□□□□ -1.46
SMARCA1P28370 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SMARCA1P28370 MRPS36P5-201ENST00000551909 298 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.9□□□□□ -1.46
SMARCA1P28370 SS18L2P2-201ENST00000583960 235 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 CCDC58P3-201ENST00000590792 430 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AC087763.1-201ENST00000603391 286 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AC005377.1-201ENST00000605126 456 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.9□□□□□ -1.46
SMARCA1P28370 AC093799.2-201ENST00000610062 578 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 AL121890.3-201ENST00000618494 516 ntBASIC5.9□□□□□ -1.46
SMARCA1P28370 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
SMARCA1P28370 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
SMARCA1P28370 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
SMARCA1P28370 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SMARCA1P28370 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
SMARCA1P28370 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
SMARCA1P28370 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SMARCA1P28370 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
SMARCA1P28370 MTCO1P18-201ENST00000455518 1419 ntBASIC5.9□□□□□ -1.47
SMARCA1P28370 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.9□□□□□ -1.47
SMARCA1P28370 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SMARCA1P28370 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SMARCA1P28370 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.89□□□□□ -1.47
SMARCA1P28370 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.89□□□□□ -1.47
SMARCA1P28370 RNU6-236P-201ENST00000363886 106 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 RNU4-40P-201ENST00000364351 143 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SMARCA1P28370 RNA5SP187-201ENST00000384400 119 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 SNORA70-201ENST00000384436 135 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 SNORD65C-201ENST00000390962 71 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 RNU6-1242P-201ENST00000391052 103 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.89□□□□□ -1.47
SMARCA1P28370 HMGB1P13-201ENST00000406019 642 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 RNA5SP296-201ENST00000410523 111 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC5.89□□□□□ -1.47
SMARCA1P28370 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC5.89□□□□□ -1.47
SMARCA1P28370 AC097499.1-201ENST00000444277 208 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SMARCA1P28370 AC002553.2-201ENST00000453217 340 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SMARCA1P28370 RN7SL515P-201ENST00000463999 297 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 RPL7AP6-201ENST00000477943 801 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 OR5M14P-201ENST00000506803 618 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC5.89□□□□□ -1.47
SMARCA1P28370 AC004980.4-201ENST00000513375 203 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 MRPS36P3-201ENST00000519284 130 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 NDUFS5P6-201ENST00000529136 295 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.89□□□□□ -1.47
SMARCA1P28370 NMNAT1P1-201ENST00000554095 876 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 AL109741.3-201ENST00000561748 592 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 CSNK1A1P1-202ENST00000563423 981 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 AL132657.2-201ENST00000564417 358 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 MIR4443-201ENST00000585052 53 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC5.89□□□□□ -1.47
SMARCA1P28370 AL627230.1-201ENST00000613077 211 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.89□□□□□ -1.47
SMARCA1P28370 AL591926.8-201ENST00000616876 211 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 AC138907.10-201ENST00000623708 983 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.89□□□□□ -1.47
SMARCA1P28370 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SMARCA1P28370 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SMARCA1P28370 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.89□□□□□ -1.47
SMARCA1P28370 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.89□□□□□ -1.47
SMARCA1P28370 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.89□□□□□ -1.47
SMARCA1P28370 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.89□□□□□ -1.47
SMARCA1P28370 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.89□□□□□ -1.47
SMARCA1P28370 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SMARCA1P28370 AC026523.2-201ENST00000625039 7739 ntBASIC5.89□□□□□ -1.47
SMARCA1P28370 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.88□□□□□ -1.47
SMARCA1P28370 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.88□□□□□ -1.47
SMARCA1P28370 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 UBE2Q2P1-202ENST00000354771 883 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SMARCA1P28370 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 AL021331.1-201ENST00000402817 582 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 MTND4P3-201ENST00000417829 541 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 AC093162.1-201ENST00000419682 124 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.88□□□□□ -1.47
SMARCA1P28370 SETP8-201ENST00000435341 628 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 AP000936.3-201ENST00000438127 255 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 PTGES3P1-201ENST00000439531 483 ntBASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms