RNA–Protein interactions for RNA: ENST00000356435.9

PTPRD-202, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 9,472 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-202ENST00000356435 DCAF8L2P0C7V8 631 aa9.49□□□□□ -0.89
PTPRD-202ENST00000356435 NISCHQ9Y2I1 1504 aa9.34□□□□□ -0.91
PTPRD-202ENST00000356435 PELP1Q8IZL8 1130 aaKnown RBP8.86□□□□□ -0.99
PTPRD-202ENST00000356435 FAM9AQ8IZU1 332 aaPredicted RBP8.83□□□□□ -1
PTPRD-202ENST00000356435 SUPT5HO00267 1087 aaKnown RBP8.83□□□□□ -1
PTPRD-202ENST00000356435 APLP2Q06481 763 aa8.75□□□□□ -1.01
PTPRD-202ENST00000356435 EHMT2Q96KQ7 1210 aa8.64□□□□□ -1.03
PTPRD-202ENST00000356435 SHROOM4Q9ULL8 1493 aa8.64□□□□□ -1.03
PTPRD-202ENST00000356435 MYT1Q01538 1121 aa8.49□□□□□ -1.05
PTPRD-202ENST00000356435 CCER1Q8TC90 406 aaPredicted RBP8.45□□□□□ -1.06
PTPRD-202ENST00000356435 ERICH6Q7L0X2 663 aa8.43□□□□□ -1.06
PTPRD-202ENST00000356435 HRCP23327 699 aa8.43□□□□□ -1.06
PTPRD-202ENST00000356435 TTBK1Q5TCY1 1321 aaPredicted RBP8.38□□□□□ -1.07
PTPRD-202ENST00000356435 ATP1B4Q9UN42 357 aaPredicted RBP8.37□□□□□ -1.07
PTPRD-202ENST00000356435 RANGAP1P46060 587 aaPredicted RBP8.35□□□□□ -1.07
PTPRD-202ENST00000356435 CENPBP07199 599 aaPredicted RBP8.29□□□□□ -1.08
PTPRD-202ENST00000356435 ZEB1P37275 1124 aaPredicted RBP8.28□□□□□ -1.08
PTPRD-202ENST00000356435 NEFLP07196 543 aa8.25□□□□□ -1.09
PTPRD-202ENST00000356435 PCGF6Q9BYE7 350 aa8.24□□□□□ -1.09
PTPRD-202ENST00000356435 TRIM41Q8WV44 630 aa8.23□□□□□ -1.09
PTPRD-202ENST00000356435 MYT1LQ9UL68 1186 aa8.23□□□□□ -1.09
PTPRD-202ENST00000356435 UBTFP17480 764 aaKnown RBP8.22□□□□□ -1.09
PTPRD-202ENST00000356435 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.13□□□□□ -1.11
PTPRD-202ENST00000356435 HNRNPUL2Q1KMD3 747 aaKnown RBP8.13□□□□□ -1.11
PTPRD-202ENST00000356435 DAXXQ9UER7 740 aaPredicted RBP8.13□□□□□ -1.11
PTPRD-202ENST00000356435 DCAF1Q9Y4B6 1507 aa8.12□□□□□ -1.11
PTPRD-202ENST00000356435 CHIC1Q5VXU3 224 aa8.11□□□□□ -1.11
PTPRD-202ENST00000356435 TRIM26Q12899 539 aaPredicted RBP8.07□□□□□ -1.12
PTPRD-202ENST00000356435 YTHDC1Q96MU7 727 aaKnown RBP8.04□□□□□ -1.12
PTPRD-202ENST00000356435 POLR3GLQ9BT43 218 aa8.04□□□□□ -1.12
PTPRD-202ENST00000356435 SLC4A1APQ9BWU0 796 aaKnown RBP8.01□□□□□ -1.13
PTPRD-202ENST00000356435 ZCCHC6Q5VYS8 1495 aaKnown RBP7.96□□□□□ -1.14
PTPRD-202ENST00000356435 ITGAEP38570 1179 aa7.95□□□□□ -1.14
PTPRD-202ENST00000356435 ZNF316A6NFI3 1004 aaPredicted RBP7.92□□□□□ -1.14
PTPRD-202ENST00000356435 CCDC180Q9P1Z9 1646 aa7.9□□□□□ -1.14
PTPRD-202ENST00000356435 PPARGC1BQ86YN6 1023 aaKnown RBP7.89□□□□□ -1.15
PTPRD-202ENST00000356435 CLSPNQ9HAW4 1339 aa7.89□□□□□ -1.15
PTPRD-202ENST00000356435 CNGB1Q14028 1251 aaPredicted RBP7.85□□□□□ -1.15
PTPRD-202ENST00000356435 ZBTB47Q9UFB7 747 aaPredicted RBP7.85□□□□□ -1.15
PTPRD-202ENST00000356435 RTL5Q5HYW3 569 aaPredicted RBP7.83□□□□□ -1.16
PTPRD-202ENST00000356435 MYO15BQ96JP2 1530 aa7.82□□□□□ -1.16
PTPRD-202ENST00000356435 ACIN1Q9UKV3 1341 aaKnown RBP7.82□□□□□ -1.16
PTPRD-202ENST00000356435 TRIM52Q96A61 297 aa7.8□□□□□ -1.16
PTPRD-202ENST00000356435 BCANQ96GW7 911 aa7.79□□□□□ -1.16
PTPRD-202ENST00000356435 FAM50AQ14320 339 aaKnown RBP7.78□□□□□ -1.16
PTPRD-202ENST00000356435 NEFMP07197 916 aa7.78□□□□□ -1.16
PTPRD-202ENST00000356435 SCAF1Q9H7N4 1312 aaKnown RBP7.77□□□□□ -1.17
PTPRD-202ENST00000356435 SLC24A1O60721 1099 aa7.77□□□□□ -1.17
PTPRD-202ENST00000356435 FBLN2P98095 1184 aa7.75□□□□□ -1.17
PTPRD-202ENST00000356435 CANXP27824 592 aaKnown RBP7.74□□□□□ -1.17
PTPRD-202ENST00000356435 ESF1Q9H501 851 aaKnown RBP7.73□□□□□ -1.17
PTPRD-202ENST00000356435 ZNF326Q5BKZ1 582 aaKnown RBP7.73□□□□□ -1.17
PTPRD-202ENST00000356435 LOC105371045A0A1W2PR82 267 aa7.7□□□□□ -1.18
PTPRD-202ENST00000356435 DIEXFQ68CQ4 756 aaKnown RBP7.67□□□□□ -1.18
PTPRD-202ENST00000356435 ABCC9O60706 1549 aa7.66□□□□□ -1.18
PTPRD-202ENST00000356435 GTF3C3Q9Y5Q9 886 aa7.66□□□□□ -1.18
PTPRD-202ENST00000356435 NEUROD1Q13562 356 aa7.65□□□□□ -1.18
PTPRD-202ENST00000356435 PABPN1Q86U42 306 aaKnown RBP eCLIP7.65□□□□□ -1.18
PTPRD-202ENST00000356435 ANP32CO43423 234 aa7.64□□□□□ -1.19
PTPRD-202ENST00000356435 STAG3Q9UJ98 1225 aa7.63□□□□□ -1.19
PTPRD-202ENST00000356435 BCL11AQ9H165 835 aa7.63□□□□□ -1.19
PTPRD-202ENST00000356435 CDK11AQ9UQ88 783 aaPredicted RBP7.61□□□□□ -1.19
PTPRD-202ENST00000356435 NPM1P06748 294 aaKnown RBP eCLIP7.59□□□□□ -1.19
PTPRD-202ENST00000356435 ZNF777Q9ULD5 760 aaPredicted RBP7.58□□□□□ -1.2
PTPRD-202ENST00000356435 ARID3CA6NKF2 412 aa7.56□□□□□ -1.2
PTPRD-202ENST00000356435 PLPPR3Q6T4P5 718 aa7.56□□□□□ -1.2
PTPRD-202ENST00000356435 ANP32BQ92688 251 aaKnown RBP7.55□□□□□ -1.2
PTPRD-202ENST00000356435 CHGAP10645 457 aaKnown RBP7.53□□□□□ -1.2
PTPRD-202ENST00000356435 HSP90AA1P07900 732 aaKnown RBP7.52□□□□□ -1.21
PTPRD-202ENST00000356435 ANP32AP39687 249 aaKnown RBP7.51□□□□□ -1.21
PTPRD-202ENST00000356435 EEA1Q15075 1411 aa7.51□□□□□ -1.21
PTPRD-202ENST00000356435 RSF1Q96T23 1441 aaPredicted RBP7.51□□□□□ -1.21
PTPRD-202ENST00000356435 CDK11BP21127 795 aaKnown RBP7.51□□□□□ -1.21
PTPRD-202ENST00000356435 WRNQ14191 1432 aaPredicted RBP eCLIP7.51□□□□□ -1.21
PTPRD-202ENST00000356435 UPF2Q9HAU5 1272 aaKnown RBP7.49□□□□□ -1.21
PTPRD-202ENST00000356435 NPM2Q86SE8 214 aaKnown RBP7.49□□□□□ -1.21
PTPRD-202ENST00000356435 P3H3Q8IVL6 736 aa7.49□□□□□ -1.21
PTPRD-202ENST00000356435 A0A0G2JS52 829 aa7.48□□□□□ -1.21
PTPRD-202ENST00000356435 RB1CC1Q8TDY2 1594 aa7.47□□□□□ -1.21
PTPRD-202ENST00000356435 TONSLQ96HA7 1378 aa7.45□□□□□ -1.22
PTPRD-202ENST00000356435 MYH16Q9H6N6 1097 aa7.44□□□□□ -1.22
PTPRD-202ENST00000356435 PPP1R15AO75807 674 aaPredicted RBP7.43□□□□□ -1.22
PTPRD-202ENST00000356435 ANP32EQ9BTT0 268 aa7.43□□□□□ -1.22
PTPRD-202ENST00000356435 C14orf37Q86TY3 774 aa7.42□□□□□ -1.22
PTPRD-202ENST00000356435 TNIKQ9UKE5 1360 aa7.42□□□□□ -1.22
PTPRD-202ENST00000356435 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.42□□□□□ -1.22
PTPRD-202ENST00000356435 HAP1P54257 671 aaPredicted RBP7.41□□□□□ -1.22
PTPRD-202ENST00000356435 ZBTB7CA1YPR0 619 aa7.41□□□□□ -1.22
PTPRD-202ENST00000356435 WDR43Q15061 677 aaKnown RBP eCLIP7.4□□□□□ -1.23
PTPRD-202ENST00000356435 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.4□□□□□ -1.23
PTPRD-202ENST00000356435 CSRNP3Q8WYN3 585 aa7.38□□□□□ -1.23
PTPRD-202ENST00000356435 CEP162Q5TB80 1403 aa7.36□□□□□ -1.23
PTPRD-202ENST00000356435 SCRIBQ14160 1630 aa7.36□□□□□ -1.23
PTPRD-202ENST00000356435 TSPY4P0CV99 314 aa7.36□□□□□ -1.23
PTPRD-202ENST00000356435 TSPY10P0CW01 314 aa7.36□□□□□ -1.23
PTPRD-202ENST00000356435 CHMP7Q8WUX9 453 aaPredicted RBP7.36□□□□□ -1.23
PTPRD-202ENST00000356435 ARID4BQ4LE39 1312 aaPredicted RBP7.35□□□□□ -1.23
PTPRD-202ENST00000356435 MIER1Q8N108 512 aa7.33□□□□□ -1.24
PTPRD-202ENST00000356435 NPHP1O15259 732 aa7.32□□□□□ -1.24
PTPRD-202ENST00000356435 GOLGA3Q08378 1498 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms