Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
HOXA1P49639 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXA1P49639 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 MRE11P1-201ENST00000464884 2127 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA1P49639 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXA1P49639 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA1P49639 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXA1P49639 AC023490.2-201ENST00000359859 470 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 RNA5SP502-201ENST00000362694 119 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA1P49639 SUGT1P2-201ENST00000379452 992 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 HSPD1P16-201ENST00000402302 394 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 MIR1203-201ENST00000408812 85 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 LINC01881-201ENST00000416103 412 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 TAF13P2-201ENST00000416876 286 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 BMS1P13-201ENST00000417301 885 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 RPL12P28-201ENST00000430852 489 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 RPS26P30-201ENST00000443431 335 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC4.36□□□□□ -1.71
HOXA1P49639 NPM1P39-201ENST00000449818 867 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 AC005008.1-201ENST00000456151 612 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 RNU7-140P-201ENST00000459546 60 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXA1P49639 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 AC093270.2-201ENST00000486157 792 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 AC008837.1-201ENST00000511513 412 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 SCARNA20.4-201ENST00000516969 131 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AP001636.2-201ENST00000525517 696 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.36□□□□□ -1.71
HOXA1P49639 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 TOMM20P1-201ENST00000534518 427 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA1P49639 OR4U1P-201ENST00000554958 912 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA1P49639 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 AC023824.3-201ENST00000569003 562 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA1P49639 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXA1P49639 AP000769.2-201ENST00000602344 396 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AP002906.1-201ENST00000603405 233 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AC009027.1-201ENST00000604510 479 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 OR2BH1P-201ENST00000608850 864 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AC015813.4-201ENST00000610469 179 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AC026368.1-201ENST00000614934 690 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 AC013470.4-201ENST00000619978 986 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA1P49639 AC123767.1-202ENST00000620407 817 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 CASC19-222ENST00000641321 1173 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 OR8A1-204ENST00000642111 1145 ntBASIC4.36□□□□□ -1.71
HOXA1P49639 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXA1P49639 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
HOXA1P49639 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
HOXA1P49639 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXA1P49639 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXA1P49639 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXA1P49639 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXA1P49639 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
HOXA1P49639 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXA1P49639 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms