Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC5.96□□□□□ -1.46
RNF4P78317 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.96□□□□□ -1.46
RNF4P78317 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC5.96□□□□□ -1.46
RNF4P78317 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC5.96□□□□□ -1.46
RNF4P78317 FGF7P1-201ENST00000582820 288 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AL589863.1-201ENST00000595383 631 ntBASIC5.96□□□□□ -1.46
RNF4P78317 PRELID3BP8-201ENST00000604148 295 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AC073046.2-201ENST00000604756 527 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AL158211.4-201ENST00000606988 584 ntBASIC5.96□□□□□ -1.46
RNF4P78317 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.96□□□□□ -1.46
RNF4P78317 AL080312.2-201ENST00000613001 630 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AC231657.1-201ENST00000624313 397 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC5.96□□□□□ -1.46
RNF4P78317 AC010325.3-201ENST00000641084 394 ntBASIC5.96□□□□□ -1.46
RNF4P78317 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.96□□□□□ -1.46
RNF4P78317 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
RNF4P78317 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
RNF4P78317 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
RNF4P78317 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC5.96□□□□□ -1.46
RNF4P78317 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
RNF4P78317 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.96□□□□□ -1.46
RNF4P78317 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.96□□□□□ -1.46
RNF4P78317 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.96□□□□□ -1.46
RNF4P78317 AC119744.1-201ENST00000454746 1715 ntBASIC5.96□□□□□ -1.46
RNF4P78317 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
RNF4P78317 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.96□□□□□ -1.46
RNF4P78317 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC5.96□□□□□ -1.46
RNF4P78317 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
RNF4P78317 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5.96□□□□□ -1.46
RNF4P78317 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.95□□□□□ -1.46
RNF4P78317 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.95□□□□□ -1.46
RNF4P78317 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 TNPO1P2-201ENST00000426249 2665 ntBASIC5.95□□□□□ -1.46
RNF4P78317 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.95□□□□□ -1.46
RNF4P78317 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 SNORD16-201ENST00000362803 99 ntBASIC5.95□□□□□ -1.46
RNF4P78317 RNA5SP350-201ENST00000363298 111 ntBASIC5.95□□□□□ -1.46
RNF4P78317 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.95□□□□□ -1.46
RNF4P78317 RNU6-780P-201ENST00000391030 104 ntBASIC5.95□□□□□ -1.46
RNF4P78317 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 AL590290.1-201ENST00000405336 380 ntBASIC5.95□□□□□ -1.46
RNF4P78317 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC5.95□□□□□ -1.46
RNF4P78317 RNU2-41P-201ENST00000410991 178 ntBASIC5.95□□□□□ -1.46
RNF4P78317 RNU6-272P-201ENST00000411028 104 ntBASIC5.95□□□□□ -1.46
RNF4P78317 DBF4P1-201ENST00000412976 1892 ntBASIC5.95□□□□□ -1.46
RNF4P78317 AL139128.1-201ENST00000413921 941 ntBASIC5.95□□□□□ -1.46
RNF4P78317 AC083875.1-201ENST00000419509 405 ntBASIC5.95□□□□□ -1.46
RNF4P78317 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.95□□□□□ -1.46
RNF4P78317 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC5.95□□□□□ -1.46
RNF4P78317 AC022022.1-201ENST00000430304 178 ntBASIC5.95□□□□□ -1.46
RNF4P78317 RPL37P21-201ENST00000435890 276 ntBASIC5.95□□□□□ -1.46
RNF4P78317 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 RPL39P6-201ENST00000448289 150 ntBASIC5.95□□□□□ -1.46
RNF4P78317 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5.95□□□□□ -1.46
RNF4P78317 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.95□□□□□ -1.46
RNF4P78317 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC5.95□□□□□ -1.46
RNF4P78317 NF1P3-201ENST00000457709 450 ntBASIC5.95□□□□□ -1.46
RNF4P78317 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 AL161747.1-201ENST00000480068 358 ntBASIC5.95□□□□□ -1.46
RNF4P78317 RPS27P20-201ENST00000492051 246 ntBASIC5.95□□□□□ -1.46
RNF4P78317 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
RNF4P78317 HMGN1P16-201ENST00000508308 283 ntBASIC5.95□□□□□ -1.46
RNF4P78317 PTGES3P3-201ENST00000511479 482 ntBASIC5.95□□□□□ -1.46
RNF4P78317 MTND5P4-201ENST00000514978 288 ntBASIC5.95□□□□□ -1.46
RNF4P78317 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC5.95□□□□□ -1.46
RNF4P78317 RN7SKP283-201ENST00000517197 270 ntBASIC5.95□□□□□ -1.46
RNF4P78317 AC027309.2-201ENST00000520566 192 ntBASIC5.95□□□□□ -1.46
RNF4P78317 HIGD1AP6-201ENST00000521833 279 ntBASIC5.95□□□□□ -1.46
RNF4P78317 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC5.95□□□□□ -1.46
RNF4P78317 RN7SL230P-201ENST00000580835 303 ntBASIC5.95□□□□□ -1.46
RNF4P78317 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 BNIP3P23-201ENST00000599655 511 ntBASIC5.95□□□□□ -1.46
RNF4P78317 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 DUXAP4-201ENST00000603046 613 ntBASIC5.95□□□□□ -1.46
RNF4P78317 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC5.95□□□□□ -1.46
RNF4P78317 uc_338.29-201ENST00000615099 168 ntBASIC5.95□□□□□ -1.46
RNF4P78317 AC007742.2-201ENST00000618226 398 ntBASIC5.95□□□□□ -1.46
RNF4P78317 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 AP005264.7-201ENST00000625003 745 ntBASIC5.95□□□□□ -1.46
RNF4P78317 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 DRG1-207ENST00000629688 309 ntTSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms