Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC067904.2-201ENST00000517322 1283 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 OR8X1P-201ENST00000534542 869 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AP001880.2-201ENST00000538233 448 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC133555.2-201ENST00000550213 292 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 CYCSP40-201ENST00000575927 294 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 RN7SL176P-201ENST00000580352 264 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 MIR4480-201ENST00000582492 71 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 BMS1P7-201ENST00000602440 1052 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC079298.2-201ENST00000623885 459 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC092159.4-201ENST00000624944 550 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS35Q96QK1 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS35Q96QK1 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS35Q96QK1 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 VN2R3P-201ENST00000422626 1412 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS35Q96QK1 RNA5SP191-201ENST00000362585 102 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 RNU1-94P-201ENST00000362627 173 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 AL139128.1-201ENST00000413921 941 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 AC004074.1-201ENST00000421810 1063 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 RGS17P1-201ENST00000423358 553 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 USP9YP9-201ENST00000429406 715 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 AL772161.1-201ENST00000439130 476 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 CALM1P2-201ENST00000452941 448 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 EIF2S2P4-201ENST00000461070 984 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 RNA5SP249-201ENST00000516127 99 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 SOX5P1-201ENST00000524155 1127 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 Mico1.1-201ENST00000611698 204 ntBASIC4.74□□□□□ -1.65
VPS35Q96QK1 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS35Q96QK1 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS35Q96QK1 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS35Q96QK1 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS35Q96QK1 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS35Q96QK1 AL442639.1-201ENST00000625030 1899 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS35Q96QK1 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS35Q96QK1 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS35Q96QK1 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS35Q96QK1 OR52B1P-201ENST00000316506 909 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 AC008549.2-201ENST00000333482 706 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS35Q96QK1 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS35Q96QK1 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS35Q96QK1 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS35Q96QK1 RSU1P3-201ENST00000412878 835 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 AC006065.1-201ENST00000422539 802 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 EIF4HP2-201ENST00000424380 563 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 CKS1BP6-201ENST00000424932 240 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS35Q96QK1 OR2B7P-201ENST00000429302 934 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS35Q96QK1 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS35Q96QK1 AC005154.2-201ENST00000438110 379 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 MRPL48P1-201ENST00000445390 636 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 SBDSP1-204ENST00000453858 737 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 RPL7AP28-201ENST00000464513 571 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 AC011005.3-201ENST00000491624 395 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS35Q96QK1 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.73□□□□□ -1.65
VPS35Q96QK1 RNA5SP303-201ENST00000516192 130 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 RN7SKP276-201ENST00000516242 268 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 RNU6-751P-201ENST00000516382 101 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 IGHV3-63-201ENST00000518422 341 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS35Q96QK1 AC092868.3-201ENST00000560515 784 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 MTATP6P25-201ENST00000574491 261 ntBASIC4.73□□□□□ -1.65
VPS35Q96QK1 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS35Q96QK1 AC124856.1-201ENST00000600819 896 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms