Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.66■□□□□ 0.74
LHX3Q9UBR4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 NUDT16P1-203ENST00000513809 620 ntBASIC19.65■□□□□ 0.74
LHX3Q9UBR4 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 AC026471.5-201ENST00000615068 467 ntBASIC19.65■□□□□ 0.74
LHX3Q9UBR4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LHX3Q9UBR4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LHX3Q9UBR4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LHX3Q9UBR4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
LHX3Q9UBR4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LHX3Q9UBR4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 AC131212.4-201ENST00000623606 975 ntBASIC19.64■□□□□ 0.73
LHX3Q9UBR4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 ZNF815P-204ENST00000434898 1737 ntBASIC19.64■□□□□ 0.73
LHX3Q9UBR4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LHX3Q9UBR4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 Z85996.1-201ENST00000494644 937 ntBASIC19.63■□□□□ 0.73
LHX3Q9UBR4 AL160286.2-201ENST00000567150 934 ntBASIC19.63■□□□□ 0.73
LHX3Q9UBR4 AC026271.3-201ENST00000571884 352 ntBASIC19.63■□□□□ 0.73
LHX3Q9UBR4 MIR4785-201ENST00000585005 73 ntBASIC19.63■□□□□ 0.73
LHX3Q9UBR4 AL031985.4-201ENST00000642138 673 ntBASIC19.63■□□□□ 0.73
LHX3Q9UBR4 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LHX3Q9UBR4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 AC104417.2-201ENST00000562989 1793 ntBASIC19.62■□□□□ 0.73
LHX3Q9UBR4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 MESTP1-201ENST00000404287 994 ntBASIC19.62■□□□□ 0.73
LHX3Q9UBR4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 AL355355.2-201ENST00000442321 338 ntBASIC19.62■□□□□ 0.73
LHX3Q9UBR4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 AP003071.4-201ENST00000562276 1284 ntBASIC19.62■□□□□ 0.73
LHX3Q9UBR4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LHX3Q9UBR4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms