Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRAIPQ9BWF2 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
TRAIPQ9BWF2 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRAIPQ9BWF2 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1
TRAIPQ9BWF2 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.32■■□□□ 1
TRAIPQ9BWF2 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.32■■□□□ 1
TRAIPQ9BWF2 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.32■■□□□ 1
TRAIPQ9BWF2 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TRAIPQ9BWF2 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TRAIPQ9BWF2 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.32■■□□□ 1
TRAIPQ9BWF2 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.32■■□□□ 1
TRAIPQ9BWF2 AP005242.2-201ENST00000580065 1175 ntBASIC21.32■■□□□ 1
TRAIPQ9BWF2 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.32■■□□□ 1
TRAIPQ9BWF2 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.32■■□□□ 1
TRAIPQ9BWF2 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.32■■□□□ 1
TRAIPQ9BWF2 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAIPQ9BWF2 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.31■■□□□ 1
TRAIPQ9BWF2 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
TRAIPQ9BWF2 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
TRAIPQ9BWF2 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 TMEM179-206ENST00000616017 1645 ntBASIC21.31■■□□□ 1
TRAIPQ9BWF2 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.31■■□□□ 1
TRAIPQ9BWF2 NAPSB-206ENST00000562112 1266 ntBASIC21.31■■□□□ 1
TRAIPQ9BWF2 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.31■■□□□ 1
TRAIPQ9BWF2 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.31■■□□□ 1
TRAIPQ9BWF2 AC010331.1-201ENST00000611423 582 ntBASIC21.31■■□□□ 1
TRAIPQ9BWF2 AC010947.1-201ENST00000623454 693 ntBASIC21.31■■□□□ 1
TRAIPQ9BWF2 AC131212.4-201ENST00000623606 975 ntBASIC21.31■■□□□ 1
TRAIPQ9BWF2 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.31■■□□□ 1
TRAIPQ9BWF2 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.31■■□□□ 1
TRAIPQ9BWF2 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
TRAIPQ9BWF2 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.31■■□□□ 1
TRAIPQ9BWF2 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAIPQ9BWF2 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.3■■□□□ 1
TRAIPQ9BWF2 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.3■■□□□ 1
TRAIPQ9BWF2 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.3■■□□□ 1
TRAIPQ9BWF2 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.3■■□□□ 1
TRAIPQ9BWF2 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAIPQ9BWF2 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.3■■□□□ 1
TRAIPQ9BWF2 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.3■■□□□ 1
TRAIPQ9BWF2 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
TRAIPQ9BWF2 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAIPQ9BWF2 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.3■■□□□ 1
TRAIPQ9BWF2 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRAIPQ9BWF2 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAIPQ9BWF2 CYP2D8P-201ENST00000433633 1490 ntBASIC21.3■■□□□ 1
TRAIPQ9BWF2 AP001271.2-201ENST00000624018 1556 ntBASIC21.3■■□□□ 1
TRAIPQ9BWF2 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRAIPQ9BWF2 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAIPQ9BWF2 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
TRAIPQ9BWF2 AL391422.3-201ENST00000603791 2761 ntBASIC21.3■■□□□ 1
TRAIPQ9BWF2 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAIPQ9BWF2 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAIPQ9BWF2 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
TRAIPQ9BWF2 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.29■■□□□ 1
TRAIPQ9BWF2 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRAIPQ9BWF2 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRAIPQ9BWF2 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.29■■□□□ 1
TRAIPQ9BWF2 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC21.29■■□□□ 1
TRAIPQ9BWF2 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.29■■□□□ 1
TRAIPQ9BWF2 AC011506.1-201ENST00000474329 610 ntBASIC21.29■■□□□ 1
TRAIPQ9BWF2 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.29■■□□□ 1
TRAIPQ9BWF2 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.29■■□□□ 1
TRAIPQ9BWF2 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.29■■□□□ 1
TRAIPQ9BWF2 HLA-A-209ENST00000638375 975 ntBASIC21.29■■□□□ 1
TRAIPQ9BWF2 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAIPQ9BWF2 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAIPQ9BWF2 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.29■■□□□ 1
TRAIPQ9BWF2 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
TRAIPQ9BWF2 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
TRAIPQ9BWF2 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
TRAIPQ9BWF2 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms