Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SKA1Q96BD8 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SKA1Q96BD8 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SKA1Q96BD8 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SKA1Q96BD8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.94■□□□□ 0.78
SKA1Q96BD8 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SKA1Q96BD8 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SKA1Q96BD8 AC005332.7-201ENST00000614046 2005 ntBASIC19.94■□□□□ 0.78
SKA1Q96BD8 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SKA1Q96BD8 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SKA1Q96BD8 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SKA1Q96BD8 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.94■□□□□ 0.78
SKA1Q96BD8 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.94■□□□□ 0.78
SKA1Q96BD8 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.94■□□□□ 0.78
SKA1Q96BD8 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SKA1Q96BD8 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.94■□□□□ 0.78
SKA1Q96BD8 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.94■□□□□ 0.78
SKA1Q96BD8 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SKA1Q96BD8 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.94■□□□□ 0.78
SKA1Q96BD8 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SKA1Q96BD8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SKA1Q96BD8 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SKA1Q96BD8 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SKA1Q96BD8 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA1Q96BD8 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA1Q96BD8 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 AL353807.1-201ENST00000427475 662 ntBASIC19.92■□□□□ 0.78
SKA1Q96BD8 FAM210CP-201ENST00000445714 574 ntBASIC19.92■□□□□ 0.78
SKA1Q96BD8 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA1Q96BD8 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA1Q96BD8 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.92■□□□□ 0.78
SKA1Q96BD8 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SKA1Q96BD8 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SKA1Q96BD8 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.91■□□□□ 0.78
SKA1Q96BD8 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SKA1Q96BD8 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms