Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ATG4DQ86TL0 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 TUBB8P6-201ENST00000436895 1288 ntBASIC17.65■□□□□ 0.42
ATG4DQ86TL0 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.65■□□□□ 0.42
ATG4DQ86TL0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.64■□□□□ 0.42
ATG4DQ86TL0 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 PRKY-204ENST00000533551 1019 ntBASIC17.64■□□□□ 0.41
ATG4DQ86TL0 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.64■□□□□ 0.41
ATG4DQ86TL0 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.64■□□□□ 0.41
ATG4DQ86TL0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ATG4DQ86TL0 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.63■□□□□ 0.41
ATG4DQ86TL0 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 KRT17P3-201ENST00000420566 1262 ntBASIC17.63■□□□□ 0.41
ATG4DQ86TL0 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 AC069544.1-201ENST00000609399 999 ntBASIC17.63■□□□□ 0.41
ATG4DQ86TL0 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 BX323043.1-201ENST00000641006 1765 ntBASIC17.63■□□□□ 0.41
ATG4DQ86TL0 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ATG4DQ86TL0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4DQ86TL0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.62■□□□□ 0.41
ATG4DQ86TL0 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ATG4DQ86TL0 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms