Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 AC104076.2-201ENST00000448912 469 ntBASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC22.34■■□□□ 1.17
SH3RF1Q7Z6J0 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 POLI-202ENST00000406285 2030 ntTSL 2 BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC22.33■■□□□ 1.17
SH3RF1Q7Z6J0 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
SH3RF1Q7Z6J0 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
SH3RF1Q7Z6J0 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC22.33■■□□□ 1.16
SH3RF1Q7Z6J0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
SH3RF1Q7Z6J0 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 KRT8P20-201ENST00000423953 1409 ntBASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 GOLGA2P11-201ENST00000562660 1621 ntBASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 AL137013.1-201ENST00000432946 1228 ntBASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 AC010947.1-201ENST00000623454 693 ntBASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SH3RF1Q7Z6J0 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 AC116562.4-201ENST00000641316 2276 ntBASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 DUX4L26-201ENST00000489078 1255 ntBASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
SH3RF1Q7Z6J0 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC22.3■■□□□ 1.16
SH3RF1Q7Z6J0 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC22.29■■□□□ 1.16
SH3RF1Q7Z6J0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms