Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SHFQ7M4L6 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.57■□□□□ 0.4
SHFQ7M4L6 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.57■□□□□ 0.4
SHFQ7M4L6 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.57■□□□□ 0.4
SHFQ7M4L6 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 BID-214ENST00000617586 542 ntTSL 5 BASIC17.57■□□□□ 0.4
SHFQ7M4L6 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
SHFQ7M4L6 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.57■□□□□ 0.4
SHFQ7M4L6 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.57■□□□□ 0.4
SHFQ7M4L6 PHGDH-210ENST00000641115 1638 ntBASIC17.57■□□□□ 0.4
SHFQ7M4L6 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.57■□□□□ 0.4
SHFQ7M4L6 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHFQ7M4L6 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 CYP2T1P-201ENST00000432607 1285 ntBASIC17.56■□□□□ 0.4
SHFQ7M4L6 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHFQ7M4L6 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.56■□□□□ 0.4
SHFQ7M4L6 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHFQ7M4L6 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHFQ7M4L6 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHFQ7M4L6 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHFQ7M4L6 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHFQ7M4L6 AC007322.1-201ENST00000426983 750 ntBASIC17.55■□□□□ 0.4
SHFQ7M4L6 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 AL589743.5-201ENST00000616611 1050 ntBASIC17.55■□□□□ 0.4
SHFQ7M4L6 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 OR10C1-204ENST00000622521 1039 ntBASIC17.55■□□□□ 0.4
SHFQ7M4L6 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SHFQ7M4L6 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHFQ7M4L6 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHFQ7M4L6 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHFQ7M4L6 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 CROCCP3-202ENST00000420820 1947 ntBASIC17.55■□□□□ 0.4
SHFQ7M4L6 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SHFQ7M4L6 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.55■□□□□ 0.4
SHFQ7M4L6 AL161938.1-201ENST00000569833 2180 ntBASIC17.55■□□□□ 0.4
SHFQ7M4L6 LETM1P2-201ENST00000597330 2178 ntBASIC17.55■□□□□ 0.4
SHFQ7M4L6 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHFQ7M4L6 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHFQ7M4L6 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.54■□□□□ 0.4
SHFQ7M4L6 AL138781.2-201ENST00000617896 1843 ntBASIC17.54■□□□□ 0.4
SHFQ7M4L6 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHFQ7M4L6 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SHFQ7M4L6 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.54■□□□□ 0.4
SHFQ7M4L6 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHFQ7M4L6 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHFQ7M4L6 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHFQ7M4L6 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHFQ7M4L6 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SHFQ7M4L6 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHFQ7M4L6 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms