Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRIF1Q5T3J3 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRIF1Q5T3J3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRIF1Q5T3J3 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LRIF1Q5T3J3 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRIF1Q5T3J3 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.33■□□□□ 0.53
LRIF1Q5T3J3 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRIF1Q5T3J3 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRIF1Q5T3J3 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRIF1Q5T3J3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.33■□□□□ 0.53
LRIF1Q5T3J3 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRIF1Q5T3J3 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
LRIF1Q5T3J3 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LRIF1Q5T3J3 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 AL390719.1-204ENST00000412397 1219 ntBASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 MKRN4P-201ENST00000444706 1521 ntBASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 NEFHP1-201ENST00000412845 2629 ntBASIC18.33■□□□□ 0.52
LRIF1Q5T3J3 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LRIF1Q5T3J3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 AF201337.1-201ENST00000520239 748 ntBASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 AL050303.2-201ENST00000619798 666 ntBASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LRIF1Q5T3J3 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms