Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 AL121829.2-201ENST00000620908 328 ntBASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
PTCHD3Q3KNS1 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PTCHD3Q3KNS1 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PTCHD3Q3KNS1 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 KRASP1-201ENST00000407852 552 ntBASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 AC124016.1-201ENST00000609552 612 ntBASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
PTCHD3Q3KNS1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 AP006587.1-201ENST00000534129 1502 ntBASIC19■□□□□ 0.63
PTCHD3Q3KNS1 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTCHD3Q3KNS1 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
PTCHD3Q3KNS1 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms