Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 AP000347.1-202ENST00000435868 847 ntBASIC18.7■□□□□ 0.58
COL28A1Q2UY09 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 AC012313.10-201ENST00000623509 926 ntBASIC18.7■□□□□ 0.58
COL28A1Q2UY09 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL28A1Q2UY09 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 INGX-201ENST00000359239 846 ntBASIC18.69■□□□□ 0.58
COL28A1Q2UY09 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 TSPY5P-201ENST00000426936 936 ntBASIC18.69■□□□□ 0.58
COL28A1Q2UY09 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 AL356652.1-201ENST00000615962 565 ntBASIC18.69■□□□□ 0.58
COL28A1Q2UY09 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL28A1Q2UY09 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 PVRIG2P-201ENST00000435460 978 ntBASIC18.68■□□□□ 0.58
COL28A1Q2UY09 YBX1P2-201ENST00000489612 999 ntBASIC18.68■□□□□ 0.58
COL28A1Q2UY09 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 AL121906.2-201ENST00000621597 723 ntBASIC18.68■□□□□ 0.58
COL28A1Q2UY09 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.68■□□□□ 0.58
COL28A1Q2UY09 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 FP700111.2-201ENST00000619190 1892 ntBASIC18.67■□□□□ 0.58
COL28A1Q2UY09 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL28A1Q2UY09 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms