Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC13.6□□□□□ -0.23
CKS1BP61024 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CKS1BP61024 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
CKS1BP61024 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CKS1BP61024 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC13.59□□□□□ -0.23
CKS1BP61024 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC13.59□□□□□ -0.23
CKS1BP61024 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CKS1BP61024 AC009053.2-201ENST00000563701 2365 ntBASIC13.59□□□□□ -0.23
CKS1BP61024 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC13.59□□□□□ -0.23
CKS1BP61024 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
CKS1BP61024 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC13.59□□□□□ -0.23
CKS1BP61024 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC13.59□□□□□ -0.23
CKS1BP61024 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CKS1BP61024 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC13.59□□□□□ -0.23
CKS1BP61024 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
CKS1BP61024 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CKS1BP61024 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CKS1BP61024 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
CKS1BP61024 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CKS1BP61024 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
CKS1BP61024 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CKS1BP61024 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC13.58□□□□□ -0.23
CKS1BP61024 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.58□□□□□ -0.24
CKS1BP61024 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
CKS1BP61024 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CKS1BP61024 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 LINC01126-201ENST00000623515 1646 ntBASIC13.58□□□□□ -0.24
CKS1BP61024 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC13.58□□□□□ -0.24
CKS1BP61024 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC13.58□□□□□ -0.24
CKS1BP61024 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC13.58□□□□□ -0.24
CKS1BP61024 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
CKS1BP61024 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC13.58□□□□□ -0.24
CKS1BP61024 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC13.58□□□□□ -0.24
CKS1BP61024 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC13.58□□□□□ -0.24
CKS1BP61024 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC13.58□□□□□ -0.24
CKS1BP61024 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
CKS1BP61024 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CKS1BP61024 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 ANKRD26P3-201ENST00000454044 2748 ntBASIC13.58□□□□□ -0.24
CKS1BP61024 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CKS1BP61024 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC13.58□□□□□ -0.24
CKS1BP61024 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CKS1BP61024 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC13.58□□□□□ -0.24
CKS1BP61024 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CKS1BP61024 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CKS1BP61024 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CKS1BP61024 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC13.57□□□□□ -0.24
CKS1BP61024 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CKS1BP61024 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC13.57□□□□□ -0.24
CKS1BP61024 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC13.57□□□□□ -0.24
CKS1BP61024 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC13.57□□□□□ -0.24
CKS1BP61024 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC13.57□□□□□ -0.24
CKS1BP61024 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC13.57□□□□□ -0.24
CKS1BP61024 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CKS1BP61024 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC13.57□□□□□ -0.24
CKS1BP61024 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
CKS1BP61024 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
CKS1BP61024 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CKS1BP61024 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC13.57□□□□□ -0.24
CKS1BP61024 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CKS1BP61024 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
CKS1BP61024 EBPL-204ENST00000378272 766 ntTSL 3 BASIC13.57□□□□□ -0.24
CKS1BP61024 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CKS1BP61024 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
CKS1BP61024 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CKS1BP61024 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
CKS1BP61024 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms