Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.07■□□□□ 0.64
PKNOX1P55347 AC116351.2-201ENST00000606540 1585 ntBASIC19.07■□□□□ 0.64
PKNOX1P55347 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
PKNOX1P55347 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
PKNOX1P55347 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.07■□□□□ 0.64
PKNOX1P55347 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
PKNOX1P55347 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.07■□□□□ 0.64
PKNOX1P55347 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
PKNOX1P55347 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 AC105036.2-201ENST00000569468 176 ntBASIC19.07■□□□□ 0.64
PKNOX1P55347 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
PKNOX1P55347 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
PKNOX1P55347 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
PKNOX1P55347 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.07■□□□□ 0.64
PKNOX1P55347 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.07■□□□□ 0.64
PKNOX1P55347 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PKNOX1P55347 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.06■□□□□ 0.64
PKNOX1P55347 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
PKNOX1P55347 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.06■□□□□ 0.64
PKNOX1P55347 AC007613.1-201ENST00000572811 2597 ntBASIC19.06■□□□□ 0.64
PKNOX1P55347 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
PKNOX1P55347 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.06■□□□□ 0.64
PKNOX1P55347 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
PKNOX1P55347 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.06■□□□□ 0.64
PKNOX1P55347 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.06■□□□□ 0.64
PKNOX1P55347 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.06■□□□□ 0.64
PKNOX1P55347 AC092437.1-201ENST00000624794 1048 ntBASIC19.06■□□□□ 0.64
PKNOX1P55347 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.06■□□□□ 0.64
PKNOX1P55347 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.06■□□□□ 0.64
PKNOX1P55347 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 AL032819.2-201ENST00000624543 2162 ntBASIC19.06■□□□□ 0.64
PKNOX1P55347 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PKNOX1P55347 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 BX276092.2-201ENST00000417668 665 ntBASIC19.05■□□□□ 0.64
PKNOX1P55347 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
PKNOX1P55347 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PKNOX1P55347 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.04■□□□□ 0.64
PKNOX1P55347 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.04■□□□□ 0.64
PKNOX1P55347 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.04■□□□□ 0.64
PKNOX1P55347 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.04■□□□□ 0.64
PKNOX1P55347 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PKNOX1P55347 AC073210.2-201ENST00000430369 194 ntBASIC19.04■□□□□ 0.64
PKNOX1P55347 CDCA4P2-201ENST00000441182 718 ntBASIC19.04■□□□□ 0.64
PKNOX1P55347 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.04■□□□□ 0.64
PKNOX1P55347 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.04■□□□□ 0.64
PKNOX1P55347 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
PKNOX1P55347 AL050303.2-201ENST00000619798 666 ntBASIC19.04■□□□□ 0.64
PKNOX1P55347 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.04■□□□□ 0.64
PKNOX1P55347 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms