Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 AC092368.3-202ENST00000574180 1591 ntBASIC17.1■□□□□ 0.33
CX3CR1P49238 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CX3CR1P49238 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CX3CR1P49238 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
CX3CR1P49238 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 AC120498.9-201ENST00000339021 3867 ntBASIC17.09■□□□□ 0.33
CX3CR1P49238 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CX3CR1P49238 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.09■□□□□ 0.33
CX3CR1P49238 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.09■□□□□ 0.33
CX3CR1P49238 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.09■□□□□ 0.33
CX3CR1P49238 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CX3CR1P49238 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 AC092666.2-201ENST00000613287 246 ntBASIC17.09■□□□□ 0.33
CX3CR1P49238 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 AC124283.5-201ENST00000624661 1809 ntBASIC17.09■□□□□ 0.33
CX3CR1P49238 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.09■□□□□ 0.33
CX3CR1P49238 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.09■□□□□ 0.33
CX3CR1P49238 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CX3CR1P49238 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CR1P49238 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CX3CR1P49238 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CR1P49238 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CR1P49238 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CX3CR1P49238 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.08■□□□□ 0.33
CX3CR1P49238 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CR1P49238 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.08■□□□□ 0.33
CX3CR1P49238 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CR1P49238 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CR1P49238 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CX3CR1P49238 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
CX3CR1P49238 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CR1P49238 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CR1P49238 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CR1P49238 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
CX3CR1P49238 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CR1P49238 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CR1P49238 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CR1P49238 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CR1P49238 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CX3CR1P49238 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.08■□□□□ 0.32
CX3CR1P49238 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.08■□□□□ 0.32
CX3CR1P49238 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.08■□□□□ 0.32
CX3CR1P49238 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CR1P49238 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.08■□□□□ 0.32
CX3CR1P49238 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CR1P49238 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.08■□□□□ 0.32
CX3CR1P49238 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CR1P49238 MYC-209ENST00000641252 345 ntBASIC17.08■□□□□ 0.32
CX3CR1P49238 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CX3CR1P49238 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CR1P49238 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CX3CR1P49238 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CR1P49238 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CX3CR1P49238 AL032819.2-201ENST00000624543 2162 ntBASIC17.08■□□□□ 0.32
CX3CR1P49238 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.08■□□□□ 0.32
CX3CR1P49238 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CX3CR1P49238 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CR1P49238 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CR1P49238 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CR1P49238 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CX3CR1P49238 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CR1P49238 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CR1P49238 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CR1P49238 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CX3CR1P49238 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.07■□□□□ 0.32
CX3CR1P49238 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.07■□□□□ 0.32
CX3CR1P49238 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.07■□□□□ 0.32
CX3CR1P49238 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.07■□□□□ 0.32
CX3CR1P49238 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.07■□□□□ 0.32
CX3CR1P49238 RPS2P52-201ENST00000469610 820 ntBASIC17.07■□□□□ 0.32
CX3CR1P49238 AL138781.1-201ENST00000566567 1274 ntBASIC17.07■□□□□ 0.32
CX3CR1P49238 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.07■□□□□ 0.32
CX3CR1P49238 HLA-B-256ENST00000639848 1089 ntBASIC17.07■□□□□ 0.32
CX3CR1P49238 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
CX3CR1P49238 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CX3CR1P49238 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CR1P49238 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CX3CR1P49238 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.07■□□□□ 0.32
CX3CR1P49238 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CR1P49238 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CX3CR1P49238 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms