Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.12■□□□□ 0.33
SOX2P48431 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX2P48431 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 GUK1-205ENST00000366722 850 ntTSL 3 BASIC17.12■□□□□ 0.33
SOX2P48431 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SOX2P48431 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.12■□□□□ 0.33
SOX2P48431 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC17.12■□□□□ 0.33
SOX2P48431 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC17.12■□□□□ 0.33
SOX2P48431 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.12■□□□□ 0.33
SOX2P48431 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SOX2P48431 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX2P48431 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SOX2P48431 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 AL355472.2-201ENST00000422958 438 ntBASIC17.11■□□□□ 0.33
SOX2P48431 KRT18P11-201ENST00000435214 1283 ntBASIC17.11■□□□□ 0.33
SOX2P48431 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.11■□□□□ 0.33
SOX2P48431 AC137761.2-201ENST00000561729 223 ntBASIC17.11■□□□□ 0.33
SOX2P48431 AC145350.3-201ENST00000569033 163 ntBASIC17.11■□□□□ 0.33
SOX2P48431 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
SOX2P48431 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
SOX2P48431 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX2P48431 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SOX2P48431 AC068338.2-201ENST00000563278 1430 ntBASIC17.11■□□□□ 0.33
SOX2P48431 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SOX2P48431 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.11■□□□□ 0.33
SOX2P48431 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SOX2P48431 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SOX2P48431 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.1■□□□□ 0.33
SOX2P48431 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SOX2P48431 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SOX2P48431 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.1■□□□□ 0.33
SOX2P48431 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.1■□□□□ 0.33
SOX2P48431 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.1■□□□□ 0.33
SOX2P48431 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.1■□□□□ 0.33
SOX2P48431 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC17.1■□□□□ 0.33
SOX2P48431 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.1■□□□□ 0.33
SOX2P48431 CYP2T3P-201ENST00000601990 817 ntBASIC17.1■□□□□ 0.33
SOX2P48431 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.1■□□□□ 0.33
SOX2P48431 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SOX2P48431 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SOX2P48431 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.09■□□□□ 0.33
SOX2P48431 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SOX2P48431 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SOX2P48431 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.09■□□□□ 0.33
SOX2P48431 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.09■□□□□ 0.33
SOX2P48431 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.09■□□□□ 0.33
SOX2P48431 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.09■□□□□ 0.33
SOX2P48431 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.09■□□□□ 0.33
SOX2P48431 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SOX2P48431 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms