Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.1■□□□□ 0.97
TNFSF9P41273 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.1■□□□□ 0.97
TNFSF9P41273 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.1■□□□□ 0.97
TNFSF9P41273 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFSF9P41273 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TNFSF9P41273 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TNFSF9P41273 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFSF9P41273 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TNFSF9P41273 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TNFSF9P41273 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.1■□□□□ 0.97
TNFSF9P41273 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.1■□□□□ 0.97
TNFSF9P41273 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TNFSF9P41273 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
TNFSF9P41273 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.1■□□□□ 0.97
TNFSF9P41273 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFSF9P41273 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TNFSF9P41273 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TNFSF9P41273 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TNFSF9P41273 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.09■□□□□ 0.97
TNFSF9P41273 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFSF9P41273 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.09■□□□□ 0.97
TNFSF9P41273 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.09■□□□□ 0.97
TNFSF9P41273 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFSF9P41273 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFSF9P41273 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFSF9P41273 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
TNFSF9P41273 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.09■□□□□ 0.97
TNFSF9P41273 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TNFSF9P41273 AL355355.2-201ENST00000442321 338 ntBASIC21.09■□□□□ 0.97
TNFSF9P41273 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.09■□□□□ 0.97
TNFSF9P41273 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFSF9P41273 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.09■□□□□ 0.97
TNFSF9P41273 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.09■□□□□ 0.97
TNFSF9P41273 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.09■□□□□ 0.97
TNFSF9P41273 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.09■□□□□ 0.97
TNFSF9P41273 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TNFSF9P41273 REXO1L10P-201ENST00000615707 1290 ntBASIC21.09■□□□□ 0.97
TNFSF9P41273 REXO1L12P-201ENST00000622156 912 ntBASIC21.09■□□□□ 0.97
TNFSF9P41273 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.09■□□□□ 0.97
TNFSF9P41273 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.09■□□□□ 0.97
TNFSF9P41273 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.08■□□□□ 0.97
TNFSF9P41273 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.08■□□□□ 0.97
TNFSF9P41273 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFSF9P41273 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.08■□□□□ 0.97
TNFSF9P41273 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TNFSF9P41273 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFSF9P41273 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.08■□□□□ 0.97
TNFSF9P41273 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.08■□□□□ 0.97
TNFSF9P41273 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TNFSF9P41273 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.08■□□□□ 0.97
TNFSF9P41273 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.08■□□□□ 0.97
TNFSF9P41273 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.08■□□□□ 0.97
TNFSF9P41273 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFSF9P41273 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.08■□□□□ 0.97
TNFSF9P41273 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TNFSF9P41273 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.08■□□□□ 0.97
TNFSF9P41273 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TNFSF9P41273 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.08■□□□□ 0.97
TNFSF9P41273 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TNFSF9P41273 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.08■□□□□ 0.97
TNFSF9P41273 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.08■□□□□ 0.96
TNFSF9P41273 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TNFSF9P41273 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TNFSF9P41273 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.96
TNFSF9P41273 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.08■□□□□ 0.96
TNFSF9P41273 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
TNFSF9P41273 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
TNFSF9P41273 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TNFSF9P41273 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 KRT17P2-201ENST00000300992 1314 ntBASIC21.07■□□□□ 0.96
TNFSF9P41273 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TNFSF9P41273 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
TNFSF9P41273 MESTP1-201ENST00000404287 994 ntBASIC21.07■□□□□ 0.96
TNFSF9P41273 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.07■□□□□ 0.96
TNFSF9P41273 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.07■□□□□ 0.96
TNFSF9P41273 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.07■□□□□ 0.96
TNFSF9P41273 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TNFSF9P41273 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.07■□□□□ 0.96
TNFSF9P41273 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.07■□□□□ 0.96
TNFSF9P41273 AL031985.4-201ENST00000642138 673 ntBASIC21.07■□□□□ 0.96
TNFSF9P41273 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.07■□□□□ 0.96
TNFSF9P41273 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TNFSF9P41273 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.07■□□□□ 0.96
TNFSF9P41273 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFSF9P41273 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.06■□□□□ 0.96
TNFSF9P41273 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.06■□□□□ 0.96
TNFSF9P41273 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFSF9P41273 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms