Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 LINC01465-201ENST00000408887 1940 ntBASIC19.49■□□□□ 0.71
PTPN4P29074 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
PTPN4P29074 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
PTPN4P29074 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
PTPN4P29074 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
PTPN4P29074 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.49■□□□□ 0.71
PTPN4P29074 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.49■□□□□ 0.71
PTPN4P29074 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.49■□□□□ 0.71
PTPN4P29074 MIR2861-201ENST00000636310 90 ntBASIC19.49■□□□□ 0.71
PTPN4P29074 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
PTPN4P29074 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
PTPN4P29074 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
PTPN4P29074 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.49■□□□□ 0.71
PTPN4P29074 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 AC005332.8-201ENST00000622750 2735 ntBASIC19.49■□□□□ 0.71
PTPN4P29074 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.49■□□□□ 0.71
PTPN4P29074 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PTPN4P29074 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
PTPN4P29074 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.48■□□□□ 0.71
PTPN4P29074 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
PTPN4P29074 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.48■□□□□ 0.71
PTPN4P29074 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.48■□□□□ 0.71
PTPN4P29074 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PTPN4P29074 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.48■□□□□ 0.71
PTPN4P29074 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
PTPN4P29074 BX119927.1-201ENST00000636596 1552 ntBASIC19.48■□□□□ 0.71
PTPN4P29074 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.48■□□□□ 0.71
PTPN4P29074 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PTPN4P29074 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PTPN4P29074 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
PTPN4P29074 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
PTPN4P29074 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
PTPN4P29074 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.47■□□□□ 0.71
PTPN4P29074 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.47■□□□□ 0.71
PTPN4P29074 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 MCRIP2P1-201ENST00000394346 511 ntBASIC19.47■□□□□ 0.71
PTPN4P29074 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.47■□□□□ 0.71
PTPN4P29074 UNC93B5-201ENST00000530315 699 ntBASIC19.47■□□□□ 0.71
PTPN4P29074 AC006058.3-201ENST00000606217 1069 ntBASIC19.47■□□□□ 0.71
PTPN4P29074 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.47■□□□□ 0.71
PTPN4P29074 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
PTPN4P29074 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.47■□□□□ 0.71
PTPN4P29074 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PTPN4P29074 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PTPN4P29074 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN4P29074 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN4P29074 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN4P29074 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN4P29074 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN4P29074 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN4P29074 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN4P29074 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.46■□□□□ 0.71
PTPN4P29074 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN4P29074 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.46■□□□□ 0.71
PTPN4P29074 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.46■□□□□ 0.71
PTPN4P29074 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN4P29074 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN4P29074 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN4P29074 AL589743.5-201ENST00000616611 1050 ntBASIC19.46■□□□□ 0.71
PTPN4P29074 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN4P29074 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.46■□□□□ 0.71
PTPN4P29074 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN4P29074 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms