Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
FREM3P0C091 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
FREM3P0C091 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
FREM3P0C091 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.71■□□□□ 0.42
FREM3P0C091 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
FREM3P0C091 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.71■□□□□ 0.42
FREM3P0C091 AL031985.4-201ENST00000642138 673 ntBASIC17.71■□□□□ 0.42
FREM3P0C091 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
FREM3P0C091 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.7■□□□□ 0.42
FREM3P0C091 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
FREM3P0C091 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
FREM3P0C091 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
FREM3P0C091 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.7■□□□□ 0.42
FREM3P0C091 AC011506.1-201ENST00000474329 610 ntBASIC17.7■□□□□ 0.42
FREM3P0C091 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.7■□□□□ 0.42
FREM3P0C091 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.7■□□□□ 0.42
FREM3P0C091 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.7■□□□□ 0.42
FREM3P0C091 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.7■□□□□ 0.42
FREM3P0C091 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
FREM3P0C091 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC17.7■□□□□ 0.42
FREM3P0C091 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
FREM3P0C091 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.69■□□□□ 0.42
FREM3P0C091 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FREM3P0C091 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
FREM3P0C091 TUBB8P6-201ENST00000436895 1288 ntBASIC17.69■□□□□ 0.42
FREM3P0C091 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.69■□□□□ 0.42
FREM3P0C091 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
FREM3P0C091 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.69■□□□□ 0.42
FREM3P0C091 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.69■□□□□ 0.42
FREM3P0C091 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
FREM3P0C091 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.69■□□□□ 0.42
FREM3P0C091 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
FREM3P0C091 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.69■□□□□ 0.42
FREM3P0C091 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
FREM3P0C091 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.69■□□□□ 0.42
FREM3P0C091 LINC01023-201ENST00000606054 436 ntBASIC17.69■□□□□ 0.42
FREM3P0C091 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
FREM3P0C091 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.69■□□□□ 0.42
FREM3P0C091 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
FREM3P0C091 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FREM3P0C091 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FREM3P0C091 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
FREM3P0C091 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
FREM3P0C091 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.68■□□□□ 0.42
FREM3P0C091 AP002982.1-201ENST00000492365 877 ntBASIC17.68■□□□□ 0.42
FREM3P0C091 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
FREM3P0C091 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.68■□□□□ 0.42
FREM3P0C091 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.68■□□□□ 0.42
FREM3P0C091 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.68■□□□□ 0.42
FREM3P0C091 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
FREM3P0C091 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.68■□□□□ 0.42
FREM3P0C091 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.68■□□□□ 0.42
FREM3P0C091 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.68■□□□□ 0.42
FREM3P0C091 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
FREM3P0C091 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.68■□□□□ 0.42
FREM3P0C091 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.68■□□□□ 0.42
FREM3P0C091 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.68■□□□□ 0.42
FREM3P0C091 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.68■□□□□ 0.42
FREM3P0C091 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.68■□□□□ 0.42
FREM3P0C091 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
FREM3P0C091 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
FREM3P0C091 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
FREM3P0C091 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.67■□□□□ 0.42
FREM3P0C091 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.67■□□□□ 0.42
FREM3P0C091 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.67■□□□□ 0.42
FREM3P0C091 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.67■□□□□ 0.42
FREM3P0C091 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
FREM3P0C091 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
FREM3P0C091 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.67■□□□□ 0.42
FREM3P0C091 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.67■□□□□ 0.42
FREM3P0C091 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.67■□□□□ 0.42
FREM3P0C091 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FREM3P0C091 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FREM3P0C091 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
FREM3P0C091 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
FREM3P0C091 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms