Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.53■□□□□ 0.72
VIMP08670 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
VIMP08670 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
VIMP08670 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.53■□□□□ 0.72
VIMP08670 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
VIMP08670 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 AC131281.2-201ENST00000520478 145 ntBASIC19.53■□□□□ 0.72
VIMP08670 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
VIMP08670 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.53■□□□□ 0.72
VIMP08670 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.53■□□□□ 0.72
VIMP08670 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 OR6D1P-202ENST00000641007 5290 ntBASIC19.53■□□□□ 0.72
VIMP08670 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
VIMP08670 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
VIMP08670 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.52■□□□□ 0.72
VIMP08670 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.52■□□□□ 0.72
VIMP08670 AC091799.1-201ENST00000422823 811 ntBASIC19.52■□□□□ 0.72
VIMP08670 AC079140.4-201ENST00000507448 529 ntBASIC19.52■□□□□ 0.72
VIMP08670 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.52■□□□□ 0.72
VIMP08670 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.52■□□□□ 0.72
VIMP08670 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VIMP08670 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VIMP08670 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VIMP08670 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.51■□□□□ 0.71
VIMP08670 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.51■□□□□ 0.71
VIMP08670 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.51■□□□□ 0.71
VIMP08670 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 KRT16P6-202ENST00000425692 1426 ntBASIC19.51■□□□□ 0.71
VIMP08670 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VIMP08670 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 MIR572-201ENST00000384983 95 ntBASIC19.51■□□□□ 0.71
VIMP08670 AL136116.3-201ENST00000402907 1138 ntBASIC19.51■□□□□ 0.71
VIMP08670 SLC7A5P2-201ENST00000553010 536 ntBASIC19.51■□□□□ 0.71
VIMP08670 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.51■□□□□ 0.71
VIMP08670 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.51■□□□□ 0.71
VIMP08670 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.51■□□□□ 0.71
VIMP08670 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.51■□□□□ 0.71
VIMP08670 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VIMP08670 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.51■□□□□ 0.71
VIMP08670 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VIMP08670 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VIMP08670 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
VIMP08670 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.5■□□□□ 0.71
VIMP08670 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VIMP08670 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VIMP08670 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.5■□□□□ 0.71
VIMP08670 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.5■□□□□ 0.71
VIMP08670 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.5■□□□□ 0.71
VIMP08670 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms