Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
MMP3P08254 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MMP3P08254 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MMP3P08254 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MMP3P08254 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MMP3P08254 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MMP3P08254 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
MMP3P08254 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MMP3P08254 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MMP3P08254 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MMP3P08254 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.59■■□□□ 1.05
MMP3P08254 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MMP3P08254 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MMP3P08254 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MMP3P08254 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MMP3P08254 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MMP3P08254 FAM8A6P-201ENST00000407496 1135 ntBASIC21.59■■□□□ 1.05
MMP3P08254 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MMP3P08254 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.59■■□□□ 1.05
MMP3P08254 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
MMP3P08254 CA15P1-201ENST00000481698 905 ntBASIC21.59■■□□□ 1.05
MMP3P08254 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC21.59■■□□□ 1.05
MMP3P08254 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.59■■□□□ 1.05
MMP3P08254 LINC01238-205ENST00000567549 1107 ntBASIC21.59■■□□□ 1.05
MMP3P08254 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MMP3P08254 AL391422.3-201ENST00000603791 2761 ntBASIC21.59■■□□□ 1.05
MMP3P08254 AC141257.4-201ENST00000634557 245 ntBASIC21.59■■□□□ 1.05
MMP3P08254 AC136944.6-201ENST00000634818 245 ntBASIC21.59■■□□□ 1.05
MMP3P08254 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
MMP3P08254 MYC-208ENST00000641036 567 ntBASIC21.59■■□□□ 1.05
MMP3P08254 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.59■■□□□ 1.05
MMP3P08254 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MMP3P08254 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.59■■□□□ 1.05
MMP3P08254 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
MMP3P08254 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
MMP3P08254 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MMP3P08254 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MMP3P08254 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
MMP3P08254 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MMP3P08254 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MMP3P08254 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MMP3P08254 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
MMP3P08254 RNF152P1-201ENST00000397754 604 ntBASIC21.58■■□□□ 1.05
MMP3P08254 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.58■■□□□ 1.05
MMP3P08254 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.58■■□□□ 1.05
MMP3P08254 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.58■■□□□ 1.05
MMP3P08254 COX11P1-201ENST00000489116 835 ntBASIC21.58■■□□□ 1.05
MMP3P08254 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.58■■□□□ 1.05
MMP3P08254 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.58■■□□□ 1.05
MMP3P08254 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.58■■□□□ 1.05
MMP3P08254 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.58■■□□□ 1.05
MMP3P08254 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.58■■□□□ 1.05
MMP3P08254 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MMP3P08254 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MMP3P08254 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
MMP3P08254 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.04
MMP3P08254 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.58■■□□□ 1.04
MMP3P08254 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.57■■□□□ 1.04
MMP3P08254 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MMP3P08254 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.57■■□□□ 1.04
MMP3P08254 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MMP3P08254 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.57■■□□□ 1.04
MMP3P08254 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
MMP3P08254 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.57■■□□□ 1.04
MMP3P08254 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.57■■□□□ 1.04
MMP3P08254 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MMP3P08254 GABARAPL3-202ENST00000624044 1851 ntBASIC21.56■■□□□ 1.04
MMP3P08254 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MMP3P08254 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.56■■□□□ 1.04
MMP3P08254 TSPY5P-201ENST00000426936 936 ntBASIC21.56■■□□□ 1.04
MMP3P08254 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.56■■□□□ 1.04
MMP3P08254 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.56■■□□□ 1.04
MMP3P08254 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.56■■□□□ 1.04
MMP3P08254 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MMP3P08254 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.56■■□□□ 1.04
MMP3P08254 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.56■■□□□ 1.04
MMP3P08254 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
MMP3P08254 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.56■■□□□ 1.04
MMP3P08254 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.56■■□□□ 1.04
MMP3P08254 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
MMP3P08254 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.55■■□□□ 1.04
MMP3P08254 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.55■■□□□ 1.04
MMP3P08254 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.55■■□□□ 1.04
MMP3P08254 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.55■■□□□ 1.04
MMP3P08254 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
MMP3P08254 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.55■■□□□ 1.04
MMP3P08254 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MMP3P08254 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
MMP3P08254 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
MMP3P08254 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms