Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
CTDNEP1O95476 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC22.58■■□□□ 1.21
CTDNEP1O95476 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
CTDNEP1O95476 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
CTDNEP1O95476 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CTDNEP1O95476 ESRRAP1-201ENST00000400596 1257 ntBASIC22.58■■□□□ 1.21
CTDNEP1O95476 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC22.58■■□□□ 1.21
CTDNEP1O95476 TUBB8P6-201ENST00000436895 1288 ntBASIC22.58■■□□□ 1.21
CTDNEP1O95476 RHOD-202ENST00000532559 538 ntTSL 3 BASIC22.58■■□□□ 1.21
CTDNEP1O95476 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
CTDNEP1O95476 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
CTDNEP1O95476 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC22.58■■□□□ 1.2
CTDNEP1O95476 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CTDNEP1O95476 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
CTDNEP1O95476 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CTDNEP1O95476 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CTDNEP1O95476 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CTDNEP1O95476 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CTDNEP1O95476 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CTDNEP1O95476 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CTDNEP1O95476 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC22.57■■□□□ 1.2
CTDNEP1O95476 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CTDNEP1O95476 AL049812.1-201ENST00000432563 2267 ntBASIC22.56■■□□□ 1.2
CTDNEP1O95476 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTDNEP1O95476 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.56■■□□□ 1.2
CTDNEP1O95476 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CTDNEP1O95476 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC22.56■■□□□ 1.2
CTDNEP1O95476 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
CTDNEP1O95476 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTDNEP1O95476 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CTDNEP1O95476 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC22.56■■□□□ 1.2
CTDNEP1O95476 ADM-205ENST00000528544 586 ntTSL 2 BASIC22.56■■□□□ 1.2
CTDNEP1O95476 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC22.56■■□□□ 1.2
CTDNEP1O95476 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC22.56■■□□□ 1.2
CTDNEP1O95476 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CTDNEP1O95476 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTDNEP1O95476 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC22.56■■□□□ 1.2
CTDNEP1O95476 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CTDNEP1O95476 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTDNEP1O95476 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTDNEP1O95476 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTDNEP1O95476 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 TNXA-203ENST00000507684 2038 ntBASIC22.55■■□□□ 1.2
CTDNEP1O95476 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 NBPF21P-201ENST00000425093 1451 ntBASIC22.55■■□□□ 1.2
CTDNEP1O95476 AC141586.3-201ENST00000562166 1838 ntBASIC22.55■■□□□ 1.2
CTDNEP1O95476 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 SERF2-207ENST00000409614 582 ntTSL 2 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 AL161938.1-201ENST00000569833 2180 ntBASIC22.55■■□□□ 1.2
CTDNEP1O95476 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC22.55■■□□□ 1.2
CTDNEP1O95476 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDNEP1O95476 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.54■■□□□ 1.2
CTDNEP1O95476 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC22.54■■□□□ 1.2
CTDNEP1O95476 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDNEP1O95476 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CTDNEP1O95476 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC22.54■■□□□ 1.2
CTDNEP1O95476 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDNEP1O95476 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC22.54■■□□□ 1.2
CTDNEP1O95476 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CTDNEP1O95476 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDNEP1O95476 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms