Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
RTN3O95197 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
RTN3O95197 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RTN3O95197 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RTN3O95197 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RTN3O95197 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.51■□□□□ 0.87
RTN3O95197 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
RTN3O95197 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RTN3O95197 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.51■□□□□ 0.87
RTN3O95197 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.51■□□□□ 0.87
RTN3O95197 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.51■□□□□ 0.87
RTN3O95197 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RTN3O95197 BX088651.1-201ENST00000540551 451 ntBASIC20.51■□□□□ 0.87
RTN3O95197 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.51■□□□□ 0.87
RTN3O95197 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.51■□□□□ 0.87
RTN3O95197 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RTN3O95197 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RTN3O95197 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.51■□□□□ 0.87
RTN3O95197 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RTN3O95197 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RTN3O95197 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.51■□□□□ 0.87
RTN3O95197 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RTN3O95197 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RTN3O95197 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RTN3O95197 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.5■□□□□ 0.87
RTN3O95197 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RTN3O95197 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
RTN3O95197 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.5■□□□□ 0.87
RTN3O95197 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.5■□□□□ 0.87
RTN3O95197 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.5■□□□□ 0.87
RTN3O95197 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
RTN3O95197 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
RTN3O95197 AC026271.3-201ENST00000571884 352 ntBASIC20.5■□□□□ 0.87
RTN3O95197 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RTN3O95197 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.5■□□□□ 0.87
RTN3O95197 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RTN3O95197 AL157384.1-201ENST00000445995 2473 ntBASIC20.5■□□□□ 0.87
RTN3O95197 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RTN3O95197 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RTN3O95197 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RTN3O95197 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RTN3O95197 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.49■□□□□ 0.87
RTN3O95197 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RTN3O95197 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
RTN3O95197 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.49■□□□□ 0.87
RTN3O95197 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
RTN3O95197 AC116562.2-201ENST00000507042 360 ntBASIC20.49■□□□□ 0.87
RTN3O95197 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.49■□□□□ 0.87
RTN3O95197 AC131212.4-201ENST00000623606 975 ntBASIC20.49■□□□□ 0.87
RTN3O95197 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.49■□□□□ 0.87
RTN3O95197 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 AC026471.1-201ENST00000564629 3026 ntBASIC20.49■□□□□ 0.87
RTN3O95197 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RTN3O95197 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RTN3O95197 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.49■□□□□ 0.87
RTN3O95197 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RTN3O95197 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RTN3O95197 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RTN3O95197 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RTN3O95197 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
RTN3O95197 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RTN3O95197 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RTN3O95197 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RTN3O95197 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.48■□□□□ 0.87
RTN3O95197 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.48■□□□□ 0.87
RTN3O95197 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.48■□□□□ 0.87
RTN3O95197 REXO1L10P-201ENST00000615707 1290 ntBASIC20.48■□□□□ 0.87
RTN3O95197 REXO1L12P-201ENST00000622156 912 ntBASIC20.48■□□□□ 0.87
RTN3O95197 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RTN3O95197 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RTN3O95197 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.48■□□□□ 0.87
RTN3O95197 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RTN3O95197 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
RTN3O95197 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RTN3O95197 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.47■□□□□ 0.87
RTN3O95197 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RTN3O95197 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RTN3O95197 HLA-A-209ENST00000638375 975 ntBASIC20.47■□□□□ 0.87
RTN3O95197 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTN3O95197 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.47■□□□□ 0.87
RTN3O95197 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RTN3O95197 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.47■□□□□ 0.87
RTN3O95197 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RTN3O95197 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RTN3O95197 TCF3P1-201ENST00000423021 1937 ntBASIC20.47■□□□□ 0.87
RTN3O95197 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.46■□□□□ 0.87
RTN3O95197 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RTN3O95197 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
RTN3O95197 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms