Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 MIR4497-201ENST00000583208 89 ntBASIC20.95■□□□□ 0.94
RNF40O75150 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.95■□□□□ 0.94
RNF40O75150 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.95■□□□□ 0.94
RNF40O75150 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
RNF40O75150 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.95■□□□□ 0.94
RNF40O75150 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RNF40O75150 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.94■□□□□ 0.94
RNF40O75150 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RNF40O75150 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.94■□□□□ 0.94
RNF40O75150 AC092720.2-201ENST00000602388 1665 ntBASIC20.94■□□□□ 0.94
RNF40O75150 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.94■□□□□ 0.94
RNF40O75150 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.94■□□□□ 0.94
RNF40O75150 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.94■□□□□ 0.94
RNF40O75150 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.94■□□□□ 0.94
RNF40O75150 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RNF40O75150 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
RNF40O75150 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.94■□□□□ 0.94
RNF40O75150 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RNF40O75150 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RNF40O75150 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.94■□□□□ 0.94
RNF40O75150 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.94■□□□□ 0.94
RNF40O75150 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.94■□□□□ 0.94
RNF40O75150 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
RNF40O75150 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.94■□□□□ 0.94
RNF40O75150 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RNF40O75150 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
RNF40O75150 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
RNF40O75150 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 AC093484.2-201ENST00000580996 2166 ntBASIC20.93■□□□□ 0.94
RNF40O75150 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
RNF40O75150 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.93■□□□□ 0.94
RNF40O75150 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.93■□□□□ 0.94
RNF40O75150 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
RNF40O75150 Z99916.2-201ENST00000604037 246 ntBASIC20.93■□□□□ 0.94
RNF40O75150 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
RNF40O75150 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.93■□□□□ 0.94
RNF40O75150 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
RNF40O75150 AC007613.1-201ENST00000572811 2597 ntBASIC20.92■□□□□ 0.94
RNF40O75150 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.92■□□□□ 0.94
RNF40O75150 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.92■□□□□ 0.94
RNF40O75150 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.92■□□□□ 0.94
RNF40O75150 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.92■□□□□ 0.94
RNF40O75150 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 POM121L13P-201ENST00000422362 380 ntBASIC20.92■□□□□ 0.94
RNF40O75150 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.92■□□□□ 0.94
RNF40O75150 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.92■□□□□ 0.94
RNF40O75150 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.92■□□□□ 0.94
RNF40O75150 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.92■□□□□ 0.94
RNF40O75150 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
RNF40O75150 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.92■□□□□ 0.94
RNF40O75150 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.92■□□□□ 0.94
RNF40O75150 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.92■□□□□ 0.94
RNF40O75150 AC116050.2-201ENST00000612102 1779 ntBASIC20.92■□□□□ 0.94
RNF40O75150 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
RNF40O75150 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RNF40O75150 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF40O75150 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF40O75150 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF40O75150 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF40O75150 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RNF40O75150 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RNF40O75150 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms